• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

BCCT:用于MATLAB上脑结构协方差连通性分析的图形用户界面工具包。

BCCT: A GUI Toolkit for Brain Structural Covariance Connectivity Analysis on MATLAB.

作者信息

Xu Qiang, Zhang Qirui, Liu Gaoping, Dai Xi-Jian, Xie Xinyu, Hao Jingru, Yu Qianqian, Liu Ruoting, Zhang Zixuan, Ye Yulu, Qi Rongfeng, Zhang Long Jiang, Zhang Zhiqiang, Lu Guangming

机构信息

College of Automation Engineering, Nanjing University of Aeronautics and Astronautics, Nanjing, China.

Department of Radiology, School of Medicine, Jinling Hospital, Nanjing University, Nanjing, China.

出版信息

Front Hum Neurosci. 2021 Apr 20;15:641961. doi: 10.3389/fnhum.2021.641961. eCollection 2021.

DOI:10.3389/fnhum.2021.641961
PMID:33958993
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8093864/
Abstract

Brain structural covariance network (SCN) can delineate the brain synchronized alterations in a long-range time period. It has been used in the research of cognition or neuropsychiatric disorders. Recently, causal analysis of structural covariance network (CaSCN), winner-take-all and cortex-subcortex covariance network (WTA-CSSCN), and modulation analysis of structural covariance network (MOD-SCN) have expended the technology breadth of SCN. However, the lack of user-friendly software limited the further application of SCN for the research. In this work, we developed the graphical user interface (GUI) toolkit of brain structural covariance connectivity based on MATLAB platform. The software contained the analysis of SCN, CaSCN, MOD-SCN, and WTA-CSSCN. Also, the group comparison and result-showing modules were included in the software. Furthermore, a simple showing of demo dataset was presented in the work. We hope that the toolkit could help the researchers, especially clinical researchers, to do the brain covariance connectivity analysis in further work more easily.

摘要

脑结构协方差网络(SCN)能够描绘出大脑在较长时间段内的同步变化。它已被用于认知或神经精神疾病的研究。最近,结构协方差网络的因果分析(CaSCN)、赢家通吃与皮层 - 皮层下协方差网络(WTA - CSSCN)以及结构协方差网络的调制分析(MOD - SCN)扩展了SCN的技术广度。然而,缺乏用户友好型软件限制了SCN在研究中的进一步应用。在这项工作中,我们基于MATLAB平台开发了脑结构协方差连接性的图形用户界面(GUI)工具包。该软件包含SCN、CaSCN、MOD - SCN和WTA - CSSCN的分析。此外,软件还包括组间比较和结果展示模块。此外,在这项工作中还展示了一个简单的演示数据集。我们希望该工具包能够帮助研究人员,特别是临床研究人员,在未来的工作中更轻松地进行脑协方差连接性分析。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b6c4/8093864/b4a782a2e2db/fnhum-15-641961-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b6c4/8093864/b05c29c65fa1/fnhum-15-641961-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b6c4/8093864/c6e06fcf272e/fnhum-15-641961-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b6c4/8093864/d935d01e71f3/fnhum-15-641961-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b6c4/8093864/105a44ea6a70/fnhum-15-641961-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b6c4/8093864/f70c1e1dc3a3/fnhum-15-641961-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b6c4/8093864/ac057b62f592/fnhum-15-641961-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b6c4/8093864/b4a782a2e2db/fnhum-15-641961-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b6c4/8093864/b05c29c65fa1/fnhum-15-641961-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b6c4/8093864/c6e06fcf272e/fnhum-15-641961-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b6c4/8093864/d935d01e71f3/fnhum-15-641961-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b6c4/8093864/105a44ea6a70/fnhum-15-641961-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b6c4/8093864/f70c1e1dc3a3/fnhum-15-641961-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b6c4/8093864/ac057b62f592/fnhum-15-641961-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b6c4/8093864/b4a782a2e2db/fnhum-15-641961-g007.jpg

相似文献

1
BCCT: A GUI Toolkit for Brain Structural Covariance Connectivity Analysis on MATLAB.BCCT:用于MATLAB上脑结构协方差连通性分析的图形用户界面工具包。
Front Hum Neurosci. 2021 Apr 20;15:641961. doi: 10.3389/fnhum.2021.641961. eCollection 2021.
2
Using Individualized Brain Network for Analyzing Structural Covariance of the Cerebral Cortex in Alzheimer's Patients.利用个体化脑网络分析阿尔茨海默病患者大脑皮质的结构协方差
Front Neurosci. 2016 Sep 1;10:394. doi: 10.3389/fnins.2016.00394. eCollection 2016.
3
Granger causality analysis implementation on MATLAB: a graphic user interface toolkit for fMRI data processing.基于 MATLAB 的格兰杰因果分析实现:用于 fMRI 数据处理的图形用户界面工具包。
J Neurosci Methods. 2012 Jan 30;203(2):418-26. doi: 10.1016/j.jneumeth.2011.10.006. Epub 2011 Oct 15.
4
Hippocampus-associated causal network of structural covariance measuring structural damage progression in temporal lobe epilepsy.海马体相关的结构协方差因果网络用于测量颞叶癫痫中的结构损伤进展。
Hum Brain Mapp. 2017 Feb;38(2):753-766. doi: 10.1002/hbm.23415. Epub 2016 Sep 28.
5
Structural and Functional Connectivity Underlying Gray Matter Covariance: Impact of Developmental Insult.结构和功能连接的基础上灰质协方差:发育损伤的影响。
Brain Connect. 2018 Jun;8(5):299-310. doi: 10.1089/brain.2018.0584.
6
MVPANI: A Toolkit With Friendly Graphical User Interface for Multivariate Pattern Analysis of Neuroimaging Data.MVPANI:一个具有友好图形用户界面的神经成像数据多变量模式分析工具包。
Front Neurosci. 2020 Jul 8;14:545. doi: 10.3389/fnins.2020.00545. eCollection 2020.
7
Structural covariance of brain region volumes is associated with both structural connectivity and transcriptomic similarity.脑区体积的结构协变与结构连接和转录组相似性都有关联。
Neuroimage. 2018 Oct 1;179:357-372. doi: 10.1016/j.neuroimage.2018.05.028. Epub 2018 May 18.
8
Neurovascular Network Explorer 1.0: a database of 2-photon single-vessel diameter measurements with MATLAB(®) graphical user interface.神经血管网络探索者 1.0:一个具有 MATLAB(®)图形用户界面的双光子单血管直径测量数据库。
Front Neuroinform. 2014 May 20;8:56. doi: 10.3389/fninf.2014.00056. eCollection 2014.
9
FC-NIRS: A Functional Connectivity Analysis Tool for Near-Infrared Spectroscopy Data.功能近红外光谱技术(FC-NIRS):一种用于近红外光谱数据的功能连接性分析工具。
Biomed Res Int. 2015;2015:248724. doi: 10.1155/2015/248724. Epub 2015 Oct 11.
10
A graphical user interface (GUI) toolkit for the calculation of three-dimensional (3D) multi-phase biological effective dose (BED) distributions including statistical analyses.一种用于计算三维(3D)多相生物有效剂量(BED)分布(包括统计分析)的图形用户界面(GUI)工具包。
Comput Methods Programs Biomed. 2016 Jul;131:1-12. doi: 10.1016/j.cmpb.2016.03.028. Epub 2016 Apr 6.

引用本文的文献

1
Progressive increase of brain gray matter volume in individuals with regular soccer training.经常进行足球训练的个体大脑灰质体积逐渐增加。
Sci Rep. 2024 Mar 25;14(1):7023. doi: 10.1038/s41598-024-57501-4.
2
Atypical characteristic changes of surface morphology and structural covariance network in developmental dyslexia.发展性阅读障碍的表面形态和结构协变网络的非典型特征变化。
Neurol Sci. 2024 May;45(5):2261-2270. doi: 10.1007/s10072-023-07193-x. Epub 2023 Nov 23.
3
Altered morphological characteristics and structural covariance connectivity associated with verbal working memory performance in ADHD children.

本文引用的文献

1
Cortico-striato-thalamo-cerebellar networks of structural covariance underlying different epilepsy syndromes associated with generalized tonic-clonic seizures.皮质-纹状体-丘脑-小脑网络的结构协变与伴有全面强直-阵挛发作的不同癫痫综合征有关。
Hum Brain Mapp. 2021 Mar;42(4):1102-1115. doi: 10.1002/hbm.25279. Epub 2020 Dec 29.
2
Structural covariance pattern abnormalities of insula in major depressive disorder: A CAN-BIND study report.重度抑郁症患者脑岛结构协变模式异常:CAN-BIND 研究报告。
Prog Neuropsychopharmacol Biol Psychiatry. 2021 Dec 20;111:110194. doi: 10.1016/j.pnpbp.2020.110194. Epub 2020 Dec 6.
3
注意缺陷多动障碍(ADHD)儿童言语工作记忆表现相关的形态学特征改变和结构协变连通性。
Br J Radiol. 2023 Nov;96(1151):20230409. doi: 10.1259/bjr.20230409. Epub 2023 Oct 3.
4
Progressive reduction in basal ganglia explains and predicts cerebral structural alteration in type 2 diabetes.基底节的进行性减少解释并预测了 2 型糖尿病的脑结构改变。
J Cereb Blood Flow Metab. 2023 Dec;43(12):2096-2104. doi: 10.1177/0271678X231197273. Epub 2023 Aug 26.
5
Abnormal cerebral metabolism and metabolic connectivity in individuals with heroin dependence: an integrated resting-state PET/fMRI study in large-scale networks.海洛因依赖个体的大脑代谢和代谢连接异常:基于大规模网络的静息态 PET/fMRI 的综合研究。
J Psychiatry Neurosci. 2023 Jul 12;48(4):E295-E304. doi: 10.1503/jpn.220171. Print 2023 Jul-Aug.
6
Mapping white matter structural covariance connectivity for single subject using wavelet transform with T1-weighted anatomical brain MRI.使用小波变换结合T1加权解剖脑MRI对单个体进行白质结构协方差连接映射。
Front Neurosci. 2022 Nov 23;16:1038514. doi: 10.3389/fnins.2022.1038514. eCollection 2022.
7
SPAMRI: A MATLAB Toolbox for Surface-Based Processing and Analysis of Magnetic Resonance Imaging.SPAMRI:一个用于基于表面的磁共振成像处理与分析的MATLAB工具箱。
Front Hum Neurosci. 2022 Jul 7;16:946156. doi: 10.3389/fnhum.2022.946156. eCollection 2022.
8
Structural Covariance of the Ipsilesional Primary Motor Cortex in Subcortical Stroke Patients with Motor Deficits.皮质下卒中运动障碍患者患侧初级运动皮层的结构协变。
Neural Plast. 2022 Mar 10;2022:1460326. doi: 10.1155/2022/1460326. eCollection 2022.
Disrupted structural covariance network in first episode schizophrenia patients: Evidence from a large sample MRI-based morphometric study.
首发精神分裂症患者结构协变网络紊乱:基于大样本 MRI 形态计量学研究的证据。
Schizophr Res. 2020 Oct;224:24-32. doi: 10.1016/j.schres.2020.11.004. Epub 2020 Nov 14.
4
Gray matter atrophy patterns within the cerebellum-neostriatum-cortical network in SCA3.SCA3 中小脑-新纹状体-皮质网络内的灰质萎缩模式。
Neurology. 2020 Dec 1;95(22):e3036-e3044. doi: 10.1212/WNL.0000000000010986. Epub 2020 Oct 6.
5
Hippocampus-driving progressive structural alterations in medication-naïve major depressive disorder.未用药的重度抑郁症中海马驱动的进行性结构改变。
J Affect Disord. 2019 Sep 1;256:148-155. doi: 10.1016/j.jad.2019.05.053. Epub 2019 May 28.
6
Graph theory analysis of DTI tractography in children with traumatic injury.基于弥散张量成像的脑白质纤维束追踪技术在儿童创伤性脑损伤中的应用。
Neuroimage Clin. 2019;21:101673. doi: 10.1016/j.nicl.2019.101673. Epub 2019 Jan 10.
7
Graph theory methods: applications in brain networks.图论方法:在脑网络中的应用
Dialogues Clin Neurosci. 2018 Jun;20(2):111-121. doi: 10.31887/DCNS.2018.20.2/osporns.
8
Progressive Reduction in Gray Matter in Patients with Schizophrenia Assessed with MR Imaging by Using Causal Network Analysis.采用因果网络分析通过磁共振成像评估精神分裂症患者灰质的渐进性减少。
Radiology. 2018 May;287(2):729. doi: 10.1148/radiol.2018184005.
9
Hippocampus-associated causal network of structural covariance measuring structural damage progression in temporal lobe epilepsy.海马体相关的结构协方差因果网络用于测量颞叶癫痫中的结构损伤进展。
Hum Brain Mapp. 2017 Feb;38(2):753-766. doi: 10.1002/hbm.23415. Epub 2016 Sep 28.
10
Atrophy and structural covariance of the cholinergic basal forebrain in primary progressive aphasia.原发性进行性失语中胆碱能基底前脑的萎缩与结构协方差
Cortex. 2016 Oct;83:124-35. doi: 10.1016/j.cortex.2016.07.004. Epub 2016 Jul 16.