Department of Pharmaceutical Biology, Institute of Pharmaceutical Sciences, University of Tübingen, Auf der Morgenstelle 8, 72076, Tübingen, Germany.
Department of Phytochemistry and Plant Systematics, Division of Pharmaceutical Industries, National Research Centre, Dokki, Cairo, Egypt.
Angew Chem Int Ed Engl. 2021 Jul 19;60(30):16472-16479. doi: 10.1002/anie.202102571. Epub 2021 Jun 17.
The increasing number of available genomes, in combination with advanced genome mining techniques, unveiled a plethora of biosynthetic gene clusters (BGCs) coding for ribosomally synthesized and post-translationally modified peptides (RiPPs). The products of these BGCs often represent an enormous resource for new and bioactive compounds, but frequently, they cannot be readily isolated and remain cryptic. Here, we describe a tunable metabologenomic approach that recruits a synergism of bioinformatics in tandem with isotope- and NMR-guided platform to identify the product of an orphan RiPP gene cluster in the genomes of Nocardia terpenica IFM 0406 and 0706 . The application of this tactic resulted in the discovery of nocathioamides family as a founder of a new class of chimeric lanthipeptides I.
随着越来越多的基因组可供使用,再加上先进的基因组挖掘技术,揭示了大量编码核糖体合成和翻译后修饰肽(RiPPs)的生物合成基因簇(BGCs)。这些 BGC 的产物通常代表了新的和生物活性化合物的巨大资源,但它们往往不容易被分离出来,仍然是隐藏的。在这里,我们描述了一种可调谐的代谢基因组学方法,该方法结合了生物信息学、同位素和 NMR 引导平台的协同作用,以鉴定 Nocardia terpenica IFM 0406 和 0706 基因组中孤儿 RiPP 基因簇产物。该策略的应用导致发现了 nocathioamides 家族,它是一类新的嵌合硫肽 I 的创始家族。