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生物信息学引导下的联芳基定制套索肽发现

Bioinformatics-Guided Discovery of Biaryl-Tailored Lasso Peptides.

作者信息

Saad Hamada, Majer Thomas, Bhattarai Keshab, Lampe Sarah, Nguyen Dinh T, Kramer Markus, Straetener Jan, Brötz-Oesterhelt Heike, Mitchell Douglas A, Gross Harald

机构信息

Department of Pharmaceutical Biology, Institute of Pharmaceutical Sciences, University of Tübingen, Auf der Morgenstelle 8, 72076 Tübingen (Germany).

Department of Chemistry and the Carl R. Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801 (United States).

出版信息

bioRxiv. 2023 Mar 6:2023.03.06.531328. doi: 10.1101/2023.03.06.531328.

Abstract

Lasso peptides are a class of ribosomally synthesized and post-translationally modified peptides (RiPPs) that feature an isopeptide bond and a distinct lariat fold. A growing number of secondary modifications have been described that further decorate lasso peptide scaffolds. Using genome mining, we have discovered a pair of lasso peptide biosynthetic gene clusters (BGCs) that include cytochrome P450 genes. Here, we report the structural characterization of two unique examples of (C-N) biaryl-containing lasso peptides. Nocapeptin A, from Nocardia terpenica, is tailored with Trp-Tyr crosslink while longipepetin A, from Longimycelium tulufanense, features Trp-Trp linkage. Besides the unusual bicyclic frame, longipepetin A receives an S-methylation by a new Met methyltransferase resulting in unprecedented sulfonium-bearing RiPP. Our bioinformatic survey revealed P450(s) and further maturating enzyme(s)-containing lasso BGCs awaiting future characterization.

摘要

套索肽是一类核糖体合成和翻译后修饰的肽(RiPPs),其特征在于异肽键和独特的套索折叠。已经描述了越来越多的二级修饰,这些修饰进一步修饰了套索肽支架。通过基因组挖掘,我们发现了一对包含细胞色素P450基因的套索肽生物合成基因簇(BGCs)。在这里,我们报告了两个独特的含(C-N)联芳基套索肽实例的结构表征。来自萜类诺卡氏菌的诺卡肽A经色氨酸-酪氨酸交联修饰,而来自吐鲁番长孢菌的长肽菌素A则具有色氨酸-色氨酸连接。除了不寻常的双环结构外,长肽菌素A还通过一种新的甲硫氨酸甲基转移酶进行S-甲基化,产生了前所未有的含锍RiPP。我们的生物信息学调查揭示了有待未来表征的含有P450和进一步成熟酶的套索BGCs。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/31a6/10028836/5f42abcff12d/nihpp-2023.03.06.531328v1-f0001.jpg

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