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噬菌体phi 29 DNA复制起点的特性分析

Characterization of the origins of replication of bacteriophage phi 29 DNA.

作者信息

Gutiérrez J, Garmendia C, Salas M

机构信息

Centro de Biología Molecular (CSIC-UAM), Universidad Autónoma, Madrid, Spain.

出版信息

Nucleic Acids Res. 1988 Jul 11;16(13):5895-914. doi: 10.1093/nar/16.13.5895.

DOI:10.1093/nar/16.13.5895
PMID:3399382
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC336836/
Abstract

The origins of replication of phi 29 DNA have been studied by analyzing the activity as templates in the phi 29 in vitro replication system of E. coli recombinant plasmids and M13 derivatives containing phi 29 DNA terminal sequences. Plasmid pITR, containing the 6 bp long inverted terminal repeat of phi 29 DNA, was shown to be essentially inactive. The analysis of a series of deletion derivatives of plasmid pID13, that contains the 73 and 269 bp from the left and right phi 29 DNA ends, respectively, indicated that the minimal origins of replication are comprised within the mutagenesis at these sequences was carried out. Changes of the second or third A into a C completely abolished the template activity. In the case of changes at position from 4 to 12, only 3 out of 14 mutations reduced the template activity; these 3 mutations were double changes and 2 of them affected the inverted terminal repeat. The results suggest that the sequence requirement at the end-proximal region of the origin of replication is more strict than that at the distal region.

摘要

通过分析含有phi 29 DNA末端序列的大肠杆菌重组质粒和M13衍生物在phi 29体外复制系统中作为模板的活性,对phi 29 DNA的复制起点进行了研究。含有phi 29 DNA 6 bp长反向末端重复序列的质粒pITR基本上没有活性。对质粒pID13的一系列缺失衍生物进行分析,该质粒分别包含来自phi 29 DNA左端和右端的73 bp和269 bp,结果表明最小复制起点包含在这些序列中,并且对这些序列进行了诱变。将第二个或第三个A突变为C完全消除了模板活性。在位置4至12处发生变化的情况下,14个突变中只有3个降低了模板活性;这3个突变是双重变化,其中2个影响反向末端重复序列。结果表明,复制起点近端区域的序列要求比远端区域更严格。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d71a/336836/1ca0e58f4919/nar00156-0204-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d71a/336836/d061c40b9475/nar00156-0196-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d71a/336836/d09a1adda578/nar00156-0198-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d71a/336836/6e7e92a42f27/nar00156-0200-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d71a/336836/ef7394f0ab23/nar00156-0202-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d71a/336836/1ca0e58f4919/nar00156-0204-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d71a/336836/d061c40b9475/nar00156-0196-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d71a/336836/d09a1adda578/nar00156-0198-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d71a/336836/6e7e92a42f27/nar00156-0200-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d71a/336836/ef7394f0ab23/nar00156-0202-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d71a/336836/1ca0e58f4919/nar00156-0204-a.jpg

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引用本文的文献

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本文引用的文献

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DNA replication of bacteriophage phi 29: characterization of the intermediates and location of the termini of replication.噬菌体φ29的DNA复制:复制中间体的特性及复制末端的定位
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Initiation of phage phi 29 DNA replication in vitro: formation of a covalent complex between the terminal protein, p3, and 5'-dAMP.噬菌体φ29 DNA体外复制的起始:末端蛋白p3与5'-dAMP之间共价复合物的形成。
Proc Natl Acad Sci U S A. 1982 Sep;79(18):5522-6. doi: 10.1073/pnas.79.18.5522.
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Structure of replicating DNA molecules of Bacillus subtilis bacteriophage phi 29.
基于噬菌体 Phi29 的最小复制系统的异源 DNA 的末端蛋白引发扩增。
Proc Natl Acad Sci U S A. 2011 Nov 15;108(46):18655-60. doi: 10.1073/pnas.1114397108. Epub 2011 Nov 7.
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Phage phi29 and Nf terminal protein-priming domain specifies the internal template nucleotide to initiate DNA replication.噬菌体φ29和Nf末端蛋白引发结构域指定内部模板核苷酸以启动DNA复制。
Proc Natl Acad Sci U S A. 2008 Nov 25;105(47):18290-5. doi: 10.1073/pnas.0809882105. Epub 2008 Nov 14.
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Signals at the bacteriophage phi 29 DNA replication origins required for protein p6 binding and activity.噬菌体phi 29 DNA复制起点处对于蛋白质p6结合及活性所需的信号。
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Regions at the carboxyl end of bacteriophage phi 29 protein p6 required for DNA binding and activity in phi 29 DNA replication.噬菌体φ29蛋白p6羧基端中DNA结合及φ29 DNA复制活性所需的区域。
Nucleic Acids Res. 1989 Jun 26;17(12):4567-77. doi: 10.1093/nar/17.12.4567.
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Genome organization of the linear plasmid, pSKL, isolated from Saccharomyces kluyveri.从克鲁维酵母中分离出的线性质粒pSKL的基因组结构。
Mol Gen Genet. 1991 Apr;226(1-2):97-106. doi: 10.1007/BF00273592.
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Initiation of phi 29 DNA replication occurs at the second 3' nucleotide of the linear template: a sliding-back mechanism for protein-primed DNA replication.φ29 DNA复制的起始发生在线性模板的第二个3'核苷酸处:蛋白质引发DNA复制的滑回机制。
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枯草芽孢杆菌噬菌体 phi 29 复制性 DNA 分子的结构
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Structure and function of the adenovirus origin of replication.腺病毒复制起点的结构与功能。
Cell. 1984 May;37(1):309-19. doi: 10.1016/0092-8674(84)90327-1.
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Buffer gradient gels and 35S label as an aid to rapid DNA sequence determination.缓冲液梯度凝胶和35S标记辅助快速DNA序列测定。
Proc Natl Acad Sci U S A. 1983 Jul;80(13):3963-5. doi: 10.1073/pnas.80.13.3963.
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Characterization and purification of a phage phi 29-encoded DNA polymerase required for the initiation of replication.用于复制起始的噬菌体φ29编码的DNA聚合酶的表征与纯化。
Proc Natl Acad Sci U S A. 1984 Sep;81(17):5325-9. doi: 10.1073/pnas.81.17.5325.
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Purification in a functional form of the terminal protein of Bacillus subtilis phage phi 29.枯草芽孢杆菌噬菌体phi 29末端蛋白的功能形式纯化
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Regulation of ribosomal RNA promoters with a synthetic lac operator.利用合成的乳糖操纵子调控核糖体RNA启动子
Proc Natl Acad Sci U S A. 1984 Nov;81(22):6929-33. doi: 10.1073/pnas.81.22.6929.
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Studies on transformation of Escherichia coli with plasmids.大肠杆菌质粒转化的研究。
J Mol Biol. 1983 Jun 5;166(4):557-80. doi: 10.1016/s0022-2836(83)80284-8.
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Construction of improved M13 vectors using oligodeoxynucleotide-directed mutagenesis.利用寡脱氧核苷酸定向诱变构建改良的M13载体。
Gene. 1983 Dec;26(1):101-6. doi: 10.1016/0378-1119(83)90040-9.