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气候适应型奶牛生产:基因组工具与统计模型的应用

Climate-Resilient Dairy Cattle Production: Applications of Genomic Tools and Statistical Models.

作者信息

Silpa Mullakkalparambil Velayudhan, König Sven, Sejian Veerasamy, Malik Pradeep Kumar, Nair Mini Ravi Reshma, Fonseca Vinicius F C, Maia Alex Sandro Campos, Bhatta Raghavendra

机构信息

Institute of Animal Breeding and Genetics, Justus-Liebig-Universität Gießen, Gießen, Germany.

Center for Climate Resilient Animal Adaptation Studies, Indian Council of Agricultural Research-National Institute of Animal Nutrition and Physiology, Bangalore, India.

出版信息

Front Vet Sci. 2021 Apr 29;8:625189. doi: 10.3389/fvets.2021.625189. eCollection 2021.

Abstract

The current changing climate trend poses a threat to the productive efficacy and welfare of livestock across the globe. This review is an attempt to synthesize information pertaining to the applications of various genomic tools and statistical models that are available to identify climate-resilient dairy cows. The different functional and economical traits which govern milk production play a significant role in determining the cost of milk production. Thus, identification of these traits may revolutionize the breeding programs to develop climate-resilient dairy cattle. Moreover, the genotype-environment interaction also influences the performance of dairy cattle especially during a challenging situation. The recent advancement in molecular biology has led to the development of a few biotechnological tools and statistical models like next-generation sequencing (NGS), microarray technology, whole transcriptome analysis, and genome-wide association studies (GWAS) which can be used to quantify the molecular mechanisms which govern the climate resilience capacity of dairy cows. Among these, the most preferred option for researchers around the globe was GWAS as this approach jointly takes into account all the genotype, phenotype, and pedigree information of farm animals. Furthermore, selection signatures can also help to demarcate functionally important regions in the genome which can be used to detect potential loci and candidate genes that have undergone positive selection in complex milk production traits of dairy cattle. These identified biomarkers can be incorporated in the existing breeding policies using genomic selection to develop climate-resilient dairy cattle.

摘要

当前气候变化趋势对全球牲畜的生产效率和福祉构成威胁。本综述旨在综合有关各种基因组工具和统计模型应用的信息,这些工具和模型可用于识别适应气候变化的奶牛。影响牛奶生产的不同功能和经济性状在决定牛奶生产成本方面起着重要作用。因此,识别这些性状可能会彻底改变育种计划,以培育适应气候变化的奶牛。此外,基因型与环境的相互作用也会影响奶牛的性能,尤其是在具有挑战性的情况下。分子生物学的最新进展导致了一些生物技术工具和统计模型的发展,如下一代测序(NGS)、微阵列技术、全转录组分析和全基因组关联研究(GWAS),这些可用于量化控制奶牛气候适应能力的分子机制。其中,全球研究人员最青睐的选择是GWAS,因为这种方法综合考虑了农场动物的所有基因型、表型和系谱信息。此外,选择印记还可以帮助划定基因组中功能重要的区域,可用于检测在奶牛复杂产奶性状中经历正选择的潜在基因座和候选基因。这些已识别的生物标志物可通过基因组选择纳入现有育种策略中,以培育适应气候变化的奶牛。

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