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转录抑制因子 Zeb2 增强子的差异使用区分了成人和胚胎造血。

Differential usage of transcriptional repressor Zeb2 enhancers distinguishes adult and embryonic hematopoiesis.

机构信息

Department of Pathology and Immunology, Washington University in St. Louis, School of Medicine, St. Louis, MO 63110, USA.

Department of Genetics, Washington University in St. Louis, School of Medicine, St. Louis, MO 63110, USA; The Edison Family Center for Genome Sciences and Systems Biology, Washington University in St. Louis, School of Medicine, St. Louis, MO 63110, USA.

出版信息

Immunity. 2021 Jul 13;54(7):1417-1432.e7. doi: 10.1016/j.immuni.2021.04.015. Epub 2021 May 17.


DOI:10.1016/j.immuni.2021.04.015
PMID:34004142
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8282756/
Abstract

The transcriptional repressor ZEB2 regulates development of many cell fates among somatic, neural, and hematopoietic lineages, but the basis for its requirement in these diverse lineages is unclear. Here, we identified a 400-basepair (bp) region located 165 kilobases (kb) upstream of the Zeb2 transcriptional start site (TSS) that binds the E proteins at several E-box motifs and was active in hematopoietic lineages. Germline deletion of this 400-bp region (Zeb2mice) specifically prevented Zeb2 expression in hematopoietic stem cell (HSC)-derived lineages. Zeb2 mice lacked development of plasmacytoid dendritic cells (pDCs), monocytes, and B cells. All macrophages in Zeb2 mice were exclusively of embryonic origin. Using single-cell chromatin profiling, we identified a second Zeb2 enhancer located at +164-kb that was selectively active in embryonically derived lineages, but not HSC-derived ones. Thus, Zeb2 expression in adult, but not embryonic, hematopoiesis is selectively controlled by the -165-kb Zeb2 enhancer.

摘要

转录抑制剂 ZEB2 调节体细胞、神经和造血谱系中许多细胞命运的发育,但它在这些不同谱系中所需的基础尚不清楚。在这里,我们确定了位于 Zeb2 转录起始位点(TSS)上游 165 千碱基(kb)处的 400 碱基(bp)区域,该区域与几个 E 盒基序结合 E 蛋白,并在造血谱系中具有活性。该 400-bp 区域(Zeb2 小鼠)的种系缺失特异性地阻止了造血干细胞(HSC)衍生谱系中的 Zeb2 表达。Zeb2 小鼠缺乏浆细胞样树突状细胞(pDC)、单核细胞和 B 细胞的发育。Zeb2 小鼠的所有巨噬细胞均仅来自胚胎。使用单细胞染色质分析,我们鉴定了位于 +164-kb 的第二个 Zeb2 增强子,该增强子仅在胚胎衍生的谱系中选择性地活跃,但在 HSC 衍生的谱系中不活跃。因此,Zeb2 在成年而不是胚胎造血中的表达是由-165-kb 的 Zeb2 增强子选择性控制的。

相似文献

[1]
Differential usage of transcriptional repressor Zeb2 enhancers distinguishes adult and embryonic hematopoiesis.

Immunity. 2021-7-13

[2]
Targeted chromatin conformation analysis identifies novel distal neural enhancers of ZEB2 in pluripotent stem cell differentiation.

Hum Mol Genet. 2020-8-29

[3]
Interplay between the EMT transcription factors ZEB1 and ZEB2 regulates hematopoietic stem and progenitor cell differentiation and hematopoietic lineage fidelity.

PLoS Biol. 2021-9

[4]
Ablation of cDC2 development by triple mutations within the Zeb2 enhancer.

Nature. 2022-7

[5]
Functional characterization of the ZEB2 regulatory landscape.

Hum Mol Genet. 2019-5-1

[6]
Transcription factor Zeb2 regulates commitment to plasmacytoid dendritic cell and monocyte fate.

Proc Natl Acad Sci U S A. 2016-12-20

[7]
An Nfil3-Zeb2-Id2 pathway imposes Irf8 enhancer switching during cDC1 development.

Nat Immunol. 2019-8-12

[8]
The EMT regulator Zeb2/Sip1 is essential for murine embryonic hematopoietic stem/progenitor cell differentiation and mobilization.

Blood. 2011-2-25

[9]
The EMT transcription factor Zeb2 controls adult murine hematopoietic differentiation by regulating cytokine signaling.

Blood. 2016-9-28

[10]
A novel long-range enhancer regulates postnatal expression of Zeb2: implications for Mowat-Wilson syndrome phenotypes.

Hum Mol Genet. 2012-9-21

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本文引用的文献

[1]
Requisite Chromatin Remodeling for Myeloid and Erythroid Lineage Differentiation from Erythromyeloid Progenitors.

Cell Rep. 2020-11-17

[2]
Co-opted transposons help perpetuate conserved higher-order chromosomal structures.

Genome Biol. 2020-1-24

[3]
Liver-Derived Signals Sequentially Reprogram Myeloid Enhancers to Initiate and Maintain Kupffer Cell Identity.

Immunity. 2019-10-3

[4]
Fate Mapping via Ms4a3-Expression History Traces Monocyte-Derived Cells.

Cell. 2019-9-5

[5]
Cryptic activation of an Irf8 enhancer governs cDC1 fate specification.

Nat Immunol. 2019-8-12

[6]
An Nfil3-Zeb2-Id2 pathway imposes Irf8 enhancer switching during cDC1 development.

Nat Immunol. 2019-8-12

[7]
Massively parallel single-cell chromatin landscapes of human immune cell development and intratumoral T cell exhaustion.

Nat Biotechnol. 2019-8-2

[8]
Shared Transcriptional Control of Innate Lymphoid Cell and Dendritic Cell Development.

Annu Rev Cell Dev Biol. 2019-7-5

[9]
Expression of factor V by resident macrophages boosts host defense in the peritoneal cavity.

J Exp Med. 2019-5-2

[10]
ZEBs: Novel Players in Immune Cell Development and Function.

Trends Immunol. 2019-4-5

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