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开发和验证稳健的胃癌免疫相关预后标志物。

Development and Validation of a Robust Immune-Related Prognostic Signature for Gastric Cancer.

机构信息

Liver Disease Center, The Affiliated Hospital of Qingdao University, No. 59 Haier Road, Qingdao 266003, China.

Qingdao University, No. 308 Ningxia Road, Qingdao 266071, China.

出版信息

J Immunol Res. 2021 Apr 30;2021:5554342. doi: 10.1155/2021/5554342. eCollection 2021.


DOI:10.1155/2021/5554342
PMID:34007851
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8110424/
Abstract

BACKGROUND: An increasing number of reports have found that immune-related genes (IRGs) have a significant impact on the prognosis of a variety of cancers, but the prognostic value of IRGs in gastric cancer (GC) has not been fully elucidated. METHODS: Univariate Cox regression analysis was adopted for the identification of prognostic IRGs in three independent cohorts (GSE62254, = 300; GSE15459, = 191; and GSE26901, = 109). After obtaining the intersecting prognostic genes, the three independent cohorts were merged into a training cohort ( = 600) to establish a prognostic model. The risk score was determined using multivariate Cox and LASSO regression analyses. Patients were classified into low-risk and high-risk groups according to the median risk score. The risk score performance was validated externally in the three independent cohorts (GSE26253, = 432; GSE84437, = 431; and TCGA, = 336). Immune cell infiltration (ICI) was quantified by the CIBERSORT method. RESULTS: A risk score comprising nine genes showed high accuracy for the prediction of the overall survival (OS) of patients with GC in the training cohort (AUC > 0.7). The risk of death was found to have a positive correlation with the risk score. The univariate and multivariate Cox regression analyses revealed that the risk score was an independent indicator of the prognosis of patients with GC ( < 0.001). External validation confirmed the universal applicability of the risk score. The low-risk group presented a lower infiltration level of M2 macrophages than the high-risk group ( < 0.001), and the prognosis of patients with GC with a higher infiltration level of M2 macrophages was poor ( = 0.011). According to clinical correlation analysis, compared with patients with the diffuse and mixed type of GC, those with the Lauren classification intestinal GC type had a significantly lower risk score ( = 0.00085). The patients' risk score increased with the progression of the clinicopathological stage. CONCLUSION: In this study, we constructed and validated a robust prognostic signature for GC, which may help improve the prognostic assessment system and treatment strategy for GC.

摘要

背景:越来越多的报告发现,免疫相关基因(IRGs)对多种癌症的预后有显著影响,但 IRGs 在胃癌(GC)中的预后价值尚未完全阐明。

方法:采用单因素 Cox 回归分析鉴定了三个独立队列(GSE62254,n=300;GSE15459,n=191;GSE26901,n=109)中的预后 IRGs。获得交集预后基因后,将三个独立队列合并为训练队列(n=600),建立预后模型。使用多因素 Cox 和 LASSO 回归分析确定风险评分。根据中位数风险评分将患者分为低风险组和高风险组。在三个独立队列(GSE26253,n=432;GSE84437,n=431;TCGA,n=336)中对风险评分进行外部验证。采用 CIBERSORT 方法量化免疫细胞浸润(ICI)。

结果:一个包含 9 个基因的风险评分在训练队列中对 GC 患者的总生存期(OS)预测具有较高的准确性(AUC>0.7)。死亡风险与风险评分呈正相关。单因素和多因素 Cox 回归分析表明,风险评分是 GC 患者预后的独立指标(<0.001)。外部验证证实了风险评分的普遍适用性。低风险组的 M2 巨噬细胞浸润水平低于高风险组(<0.001),M2 巨噬细胞浸润水平较高的 GC 患者预后较差(=0.011)。根据临床相关性分析,与弥漫型和混合型 GC 患者相比,Lauren 分类肠型 GC 患者的风险评分明显较低(=0.00085)。患者的风险评分随临床病理分期的进展而增加。

结论:本研究构建并验证了 GC 的稳健预后标志物,可能有助于改善 GC 的预后评估系统和治疗策略。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/619a/8110424/f7fd0fd357a9/JIR2021-5554342.011.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/619a/8110424/4ca9d76cfb42/JIR2021-5554342.006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/619a/8110424/7fad6c7039b8/JIR2021-5554342.007.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/619a/8110424/4ca9d76cfb42/JIR2021-5554342.006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/619a/8110424/7fad6c7039b8/JIR2021-5554342.007.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/619a/8110424/f7fd0fd357a9/JIR2021-5554342.011.jpg

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本文引用的文献

[1]
Construction of an immune-related gene signature to predict survival and treatment outcome in gastric cancer.

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