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活细胞中表观遗传复合物的单分子成像:来自多梳蛋白复合体研究的见解

Single-molecule imaging of epigenetic complexes in living cells: insights from studies on Polycomb group proteins.

作者信息

Brown Kyle, Andrianakos Haralambos, Ingersoll Steven, Ren Xiaojun

机构信息

Department of Chemistry, University of Colorado Denver, Denver, CO 80217-3364, USA.

出版信息

Nucleic Acids Res. 2021 Jul 9;49(12):6621-6637. doi: 10.1093/nar/gkab304.

Abstract

Chromatin-associated factors must locate, bind to, and assemble on specific chromatin regions to execute chromatin-templated functions. These dynamic processes are essential for understanding how chromatin achieves regulation, but direct quantification in living mammalian cells remains challenging. Over the last few years, live-cell single-molecule tracking (SMT) has emerged as a new way to observe trajectories of individual chromatin-associated factors in living mammalian cells, providing new perspectives on chromatin-templated activities. Here, we discuss the relative merits of live-cell SMT techniques currently in use. We provide new insights into how Polycomb group (PcG) proteins, master regulators of development and cell differentiation, decipher genetic and epigenetic information to achieve binding stability and highlight that Polycomb condensates facilitate target-search efficiency. We provide perspectives on liquid-liquid phase separation in organizing Polycomb targets. We suggest that epigenetic complexes integrate genetic and epigenetic information for target binding and localization and achieve target-search efficiency through nuclear organization.

摘要

与染色质相关的因子必须定位、结合并组装在特定的染色质区域,以执行以染色质为模板的功能。这些动态过程对于理解染色质如何实现调控至关重要,但在活的哺乳动物细胞中进行直接定量仍然具有挑战性。在过去几年中,活细胞单分子追踪(SMT)已成为一种观察活的哺乳动物细胞中单个与染色质相关因子轨迹的新方法,为以染色质为模板的活动提供了新的视角。在这里,我们讨论了目前使用的活细胞SMT技术的相对优点。我们对多梳蛋白家族(PcG)蛋白(发育和细胞分化的主要调节因子)如何解读遗传和表观遗传信息以实现结合稳定性提供了新的见解,并强调多梳凝聚物促进了靶点搜索效率。我们提供了关于液-液相分离在组织多梳靶点方面的观点。我们认为表观遗传复合物整合遗传和表观遗传信息以实现靶点结合和定位,并通过细胞核组织实现靶点搜索效率。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4bb9/8266577/efaa6c29b809/gkab304fig1.jpg

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