School of Food Science and Biotechnology, Kyungpook National University, Daegu 41566, Republic of Korea.
Food and Bio-Industry Research Institute, Kyungpook National University, Daegu 41566, Republic of Korea.
J Microbiol Biotechnol. 2021 Jul 28;31(7):949-955. doi: 10.4014/jmb.2103.03041.
Previously, our research group isolated IDCC4401 from infant feces as a potential probiotic. For this study, we evaluated the safety of IDCC4401 using genomic and phenotypic analyses. Whole genome sequencing was performed to identify genomic characteristics and investigate the potential presence of genes encoding virulence, antibiotic resistance, and mobile genetic elements. Phenotypic analyses including antibiotic susceptibility, enzyme activity, production of biogenic amines (BAs), and proportion of D-/L-lactate were evaluated using E-test, API ZYM test, high-performance liquid chromatography (HPLC), and D-/L-lactic acid assay respectively. The genome of IDCC4401 consists of 2,426,499 bp with a GC content of 58.70% and 2,016 coding regions. Confirmation of the genome as was provided by its 98.93% similarity with DSM20213. Furthermore, IDCC4401 genes encoding virulence and antibiotic resistance were not identified. Although IDCC4401 showed antibiotic resistance against vancomycin, we confirmed that this was an intrinsic feature since the antibiotic resistance gene was not present. IDCC4401 showed leucine arylamidase, cystine arylamidase, α-galactosidase, β-galactosidase, and α-glucosidase activities, whereas it did not show production of harmful enzymes such as β-glucosidase and β-glucuronidase. In addition, IDCC4401 did not produce any tyramine, histamine, putrescine, cadaverine, or 2-phenethylamine, which are frequently detected BAs during fermentation. IDCC4401 produced 95.08% of L-lactate and 4.92% of Dlactate. Therefore, our findings demonstrate the safety of IDCC 4401 as a potential probiotic for use in the food industry.
先前,我们的研究团队从婴儿粪便中分离出 IDCC4401 作为一种潜在的益生菌。在这项研究中,我们通过基因组和表型分析来评估 IDCC4401 的安全性。进行全基因组测序以识别基因组特征,并研究编码毒力、抗生素耐药性和可移动遗传元件的基因的潜在存在。使用 E 试验、API ZYM 试验、高效液相色谱 (HPLC) 和 D-/L-乳酸测定分别评估包括抗生素敏感性、酶活性、生物胺 (BA) 产生和 D-/L-乳酸比例的表型分析。IDCC4401 的基因组由 2426499 bp 组成,GC 含量为 58.70%,有 2016 个编码区。通过与 DSM20213 的 98.93%相似性,确认了该基因组是 。此外,未发现 IDCC4401 编码毒力和抗生素耐药性的基因。尽管 IDCC4401 对万古霉素表现出抗生素耐药性,但我们证实这是固有特征,因为不存在抗生素耐药基因。IDCC4401 显示亮氨酸芳基酰胺酶、半胱氨酸芳基酰胺酶、α-半乳糖苷酶、β-半乳糖苷酶和α-葡萄糖苷酶活性,而不产生β-葡萄糖苷酶和β-葡糖苷酸酶等有害酶。此外,IDCC4401 不产生发酵过程中经常检测到的任何酪胺、组氨酸、腐胺、尸胺或 2-苯乙胺等生物胺。IDCC4401 产生 95.08%的 L-乳酸和 4.92%的 D-乳酸。因此,我们的研究结果表明 IDCC4401 作为食品工业中潜在益生菌的安全性。