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EstimateM:一个用于计算甲基化年龄的网络服务器中心。

Estimage: a webserver hub for the computation of methylation age.

机构信息

Department of Computer Science and Engineering - DISI, University of Bologna, Bologna 40100, Italy.

Department of Physics and Astronomy, University of Bologna, Bologna 40100, Italy.

出版信息

Nucleic Acids Res. 2021 Jul 2;49(W1):W199-W206. doi: 10.1093/nar/gkab426.

Abstract

Methylage is an epigenetic marker of biological age that exploits the correlation between the methylation state of specific CG dinucleotides (CpGs) and chronological age (in years), gestational age (in weeks), cellular age (in cell cycles or as telomere length, in kilobases). Using DNA methylation data, methylage is measurable via the so called epigenetic clocks. Importantly, alterations of the correlation between methylage and age (age acceleration or deceleration) have been stably associated with pathological states and occur long before clinical signs of diseases become overt, making epigenetic clocks a potentially disruptive tool in preventive, diagnostic and also in forensic applications. Nevertheless, methylage dependency from CpGs selection, mathematical modelling, tissue specificity and age range, still makes the potential of this biomarker limited. In order to enhance model comparisons, interchange, availability, robustness and standardization, we organized a selected set of clocks within a hub webservice, EstimAge (Estimate of methylation Age, http://estimage.iac.rm.cnr.it), which intuitively and informatively enables quick identification, computation and comparison of available clocks, with the support of standard statistics.

摘要

甲基化年龄是一种基于表观遗传学的生物年龄标志物,它利用了特定 CG 二核苷酸(CpG)的甲基化状态与实际年龄(以年为单位)、胎龄(以周为单位)和细胞年龄(以细胞周期或端粒长度为单位,以千碱基为单位)之间的相关性。通过使用 DNA 甲基化数据,可以通过所谓的表观遗传钟来测量甲基化年龄。重要的是,甲基化年龄与年龄之间相关性的改变(加速或减速)与病理状态稳定相关,并且在疾病的临床症状明显出现之前很早就发生了,这使得表观遗传钟成为预防、诊断甚至法医应用中一种有潜力的颠覆性工具。然而,甲基化年龄对 CpG 选择、数学模型、组织特异性和年龄范围的依赖性,仍然限制了这种生物标志物的潜力。为了增强模型比较、互换、可用性、稳健性和标准化,我们在一个名为 EstimAge(甲基化年龄估计,http://estimage.iac.rm.cnr.it)的中心网络服务中组织了一组精选的时钟,该服务直观且信息量丰富,可支持标准统计信息,快速识别、计算和比较可用的时钟。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/901d/8262735/6b8233c7e864/gkab426gra1.jpg

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