Lu Ake T, Seeboth Anne, Tsai Pei-Chien, Sun Dianjianyi, Quach Austin, Reiner Alex P, Kooperberg Charles, Ferrucci Luigi, Hou Lifang, Baccarelli Andrea A, Li Yun, Harris Sarah E, Corley Janie, Taylor Adele, Deary Ian J, Stewart James D, Whitsel Eric A, Assimes Themistocles L, Chen Wei, Li Shengxu, Mangino Massimo, Bell Jordana T, Wilson James G, Aviv Abraham, Marioni Riccardo E, Raj Kenneth, Horvath Steve
Department of Human Genetics, David Geffen School of Medicine, University of California Los Angeles, Los Angeles, CA 90095, USA.
Centre for Genomic and Experimental Medicine, Institute of Genetics & Molecular Medicine, University of Edinburgh, Edinburgh EH4 2XU, UK.
Aging (Albany NY). 2019 Aug 18;11(16):5895-5923. doi: 10.18632/aging.102173.
Telomere length (TL) is associated with several aging-related diseases. Here, we present a DNA methylation estimator of TL (DNAmTL) based on 140 CpGs. Leukocyte DNAmTL is applicable across the entire age spectrum and is more strongly associated with age than measured leukocyte TL (LTL) (-0.75 for DNAmTL versus -0.35 for LTL). Leukocyte DNAmTL outperforms LTL in predicting: i) time-to-death (p=2.5E-20), ii) time-to-coronary heart disease (p=6.6E-5), iii) time-to-congestive heart failure (p=3.5E-6), and iv) association with smoking history (p=1.21E-17). These associations are further validated in large scale methylation data (n=10k samples) from the Framingham Heart Study, Women's Health Initiative, Jackson Heart Study, InChianti, Lothian Birth Cohorts, Twins UK, and Bogalusa Heart Study. Leukocyte DNAmTL is also associated with measures of physical fitness/functioning (p=0.029), age-at-menopause (p=0.039), dietary variables (omega 3, fish, vegetable intake), educational attainment (p=3.3E-8) and income (p=3.1E-5). Experiments in cultured somatic cells show that DNAmTL dynamics reflect in part cell replication rather than TL . DNAmTL is not only an epigenetic biomarker of replicative history of cells, but a useful marker of age-related pathologies that are associated with it.
端粒长度(TL)与多种衰老相关疾病有关。在此,我们基于140个CpG位点提出了一种端粒长度的DNA甲基化估计值(DNAmTL)。白细胞DNAmTL适用于整个年龄范围,并且与年龄的相关性比测量的白细胞端粒长度(LTL)更强(DNAmTL为-0.75,而LTL为-0.35)。在预测以下方面时,白细胞DNAmTL优于LTL:i)死亡时间(p = 2.5E - 20),ii)冠心病发病时间(p = 6.6E - 5),iii)充血性心力衰竭发病时间(p = 3.5E - 6),以及iv)与吸烟史的关联(p = 1.21E - 17)。这些关联在弗雷明汉心脏研究、女性健康倡议、杰克逊心脏研究、因斯布鲁克研究、洛锡安出生队列、英国双胞胎研究和博加卢萨心脏研究的大规模甲基化数据(n = 10k样本)中得到了进一步验证。白细胞DNAmTL还与身体 fitness/functioning 指标(p = 0.029)、绝经年龄(p = 0.039)、饮食变量(ω-3、鱼类、蔬菜摄入量)、教育程度(p = 3.3E - 8)和收入(p = 3.1E - 5)相关。培养的体细胞实验表明,DNAmTL动态部分反映细胞复制而非端粒长度。DNAmTL不仅是细胞复制历史的表观遗传生物标志物,也是与其相关的年龄相关病理的有用标志物。