• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利：CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法，用中文像聊天一样搜索，搜遍4000万医学文献。AI智能推荐，让科研检索更轻松。

立即免费搜索

文件翻译

保留排版，准确专业，支持PDF/Word/PPT等文件格式，支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述，25分钟生成高质量综述，智能提取关键信息，辅助科研写作。

立即免费体验

从患有中耳炎的犬耳道分离出的厚皮马拉色菌的全基因组测序与组装

Whole-Genome Sequencing and Assembly of Malassezia pachydermatis Isolated from the Ear Canal of a Dog with Otitis.

作者信息

D'Andreano S, Viñes J, Francino O

机构信息

SVGM, Molecular Genetics Veterinary Service, Universitat Autònoma de Barcelona, Bellaterra, Barcelona, Spain.

Vetgenomics, Edifici EUREKA, PRUAB, Bellaterra, Barcelona, Spain.

出版信息

Microbiol Resour Announc. 2021 May 27;10(21):e0020521. doi: 10.1128/MRA.00205-21.

DOI:10.1128/MRA.00205-21
PMID:34042482
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8201622/
Abstract

We have assembled the genome sequence of Malassezia pachydermatis isolated from a canine otitis sample with Nanopore-only long reads. With 99× coverage and 8.23 Mbp, the genome sequence was assembled in 10 contigs, with 6 of them corresponding to chromosomes, improving the scaffolding of previous genome assemblies for the species.

摘要

我们利用仅基于纳米孔的长读长技术，组装了从一份犬中耳炎样本中分离出的厚皮马拉色菌的基因组序列。该基因组序列的覆盖度为99倍，大小为823万碱基对，组装成了10个重叠群，其中6个对应于染色体，改进了该物种先前基因组组装的支架构建。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5043/8201622/c5c13b9dabba/mra.00205-21-f0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5043/8201622/c5c13b9dabba/mra.00205-21-f0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5043/8201622/c5c13b9dabba/mra.00205-21-f0001.jpg

相似文献

1
Whole-Genome Sequencing and Assembly of Malassezia pachydermatis Isolated from the Ear Canal of a Dog with Otitis.从患有中耳炎的犬耳道分离出的厚皮马拉色菌的全基因组测序与组装
Microbiol Resour Announc. 2021 May 27;10(21):e0020521. doi: 10.1128/MRA.00205-21.
2
Study of lipid in the ear canal in canine otitis externa with Malassezia pachydermatis.犬外耳炎合并厚皮马拉色菌时耳道脂质的研究。
J Vet Med Sci. 2000 Nov;62(11):1177-82. doi: 10.1292/jvms.62.1177.
3
Quantification of Malassezia pachydermatis by real-time PCR in swabs from the external ear canal of dogs.通过实时聚合酶链反应对犬外耳道拭子中的厚皮马拉色菌进行定量分析。
J Vet Diagn Invest. 2019 May;31(3):440-447. doi: 10.1177/1040638719840686. Epub 2019 Apr 4.
4
Otitis externa induced with Malassezia pachydermatis in dogs and the efficacy of pimaricin.犬马拉色菌引起的外耳炎及匹马霉素的疗效。
J Vet Med Sci. 1992 Aug;54(4):611-4. doi: 10.1292/jvms.54.611.
5
Genomic Tandem Quadruplication is Associated with Ketoconazole Resistance in .基因组串联四倍体与……中的酮康唑耐药性相关。 （原文句子不完整，缺少具体研究对象）
J Microbiol Biotechnol. 2018 Nov 28;28(11):1937-1945. doi: 10.4014/jmb.1810.10019.
6
Malassezia pachydermatis isolated from normal and diseased external ear canals in dogs: a comparative analysis.从犬正常和患病外耳道分离出的厚皮马拉色菌：一项比较分析。
Vet J. 2006 Nov;172(3):544-8. doi: 10.1016/j.tvjl.2005.07.004. Epub 2005 Sep 12.
7
Isolation of Malassezia pachydermatis and M. sympodialis from the external ear canal of cats with and without otitis externa.从患有和未患有外耳炎的猫的外耳道中分离出厚皮马拉色菌和合轴马拉色菌。
Acta Vet Hung. 2007 Dec;55(4):471-7. doi: 10.1556/AVet.55.2007.4.6.
8
LongStitch: high-quality genome assembly correction and scaffolding using long reads.LongStitch：使用长读长进行高质量基因组组装纠错和 scaffolding。
BMC Bioinformatics. 2021 Oct 30;22(1):534. doi: 10.1186/s12859-021-04451-7.
9
Antifungal susceptibility of isolated from the external auditive conduct from dogs, in central Chile.智利中部从犬外耳道分离的真菌的药敏试验。
Open Vet J. 2022 Jan-Feb;12(1):99-104. doi: 10.5455/OVJ.2022.v12.i1.12. Epub 2022 Feb 10.
10
Study to assess in vitro antimicrobial activity of nine ear cleaners against 50 Malassezia pachydermatis isolates.评估九种耳部清洁产品对50株厚皮马拉色菌分离株的体外抗菌活性的研究。
Vet Dermatol. 2013 Jun;24(3):362-6, e80-1. doi: 10.1111/vde.12024. Epub 2013 Apr 2.

引用本文的文献

1
: Zoonotic Implications, Parallels and Differences in Colonization and Disease in Humans and Animals.人畜共患病的影响、人类与动物定植及疾病中的相似之处与差异
J Fungi (Basel). 2022 Jul 4;8(7):708. doi: 10.3390/jof8070708.

本文引用的文献

1
Rapid and real-time identification of fungi up to species level with long amplicon nanopore sequencing from clinical samples.利用长扩增子纳米孔测序技术从临床样本中快速实时鉴定真菌至种水平。
Biol Methods Protoc. 2020 Dec 23;6(1):bpaa026. doi: 10.1093/biomethods/bpaa026. eCollection 2021 Jan 22.
2
Towards Genomic Criteria for Delineating Fungal Species.迈向界定真菌物种的基因组标准
J Fungi (Basel). 2020 Oct 24;6(4):246. doi: 10.3390/jof6040246.
3
Delineating yeast species with genome average nucleotide identity: a calibration of ANI with haplontic, heterothallic Metschnikowia species.
用基因组平均核苷酸同一性划分酵母种：与单倍型、异配性的梅奇尼科夫酵母属物种的 ANI 校准。
Antonie Van Leeuwenhoek. 2020 Dec;113(12):2097-2106. doi: 10.1007/s10482-020-01480-9. Epub 2020 Oct 13.
4
Loss of centromere function drives karyotype evolution in closely related species.着丝粒功能丧失驱动近缘物种的核型进化。
Elife. 2020 Jan 20;9:e53944. doi: 10.7554/eLife.53944.
5
BUSCO: Assessing Genome Assembly and Annotation Completeness.BUSCO：评估基因组组装和注释的完整性
Methods Mol Biol. 2019;1962:227-245. doi: 10.1007/978-1-4939-9173-0_14.
6
Assembly of long, error-prone reads using repeat graphs.使用重复图组装长的、易错的读取。
Nat Biotechnol. 2019 May;37(5):540-546. doi: 10.1038/s41587-019-0072-8. Epub 2019 Apr 1.
7
High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries.高通量 ANI 分析 9 万余组原核基因组揭示了清晰的物种界限。
Nat Commun. 2018 Nov 30;9(1):5114. doi: 10.1038/s41467-018-07641-9.
8
Deepbinner: Demultiplexing barcoded Oxford Nanopore reads with deep convolutional neural networks.Deepbinner：使用深度卷积神经网络对带有条形码的牛津纳米孔读取进行多路分解。
PLoS Comput Biol. 2018 Nov 20;14(11):e1006583. doi: 10.1371/journal.pcbi.1006583. eCollection 2018 Nov.
9
Malassezia ecology, pathophysiology, and treatment.马拉色菌的生态学、病理生理学及治疗
Med Mycol. 2018 Apr 1;56(suppl_1):S10-S25. doi: 10.1093/mmy/myx134.
10
Genus-Wide Comparative Genomics of Malassezia Delineates Its Phylogeny, Physiology, and Niche Adaptation on Human Skin.马拉色菌属全基因组比较基因组学描绘了其在人体皮肤上的系统发育、生理学和生态位适应性。
PLoS Genet. 2015 Nov 5;11(11):e1005614. doi: 10.1371/journal.pgen.1005614. eCollection 2015 Nov.