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在 中全基因组鉴定和 β-淀粉酶基因家族的表达分析。

Genome-Wide Identification and Expression Analysis of the β-Amylase Gene Family in .

机构信息

College of Life Sciences, Yantai University, Yantai, China.

School of Biological Sciences, University of Canterbury, Christchurch, New Zealand.

出版信息

DNA Cell Biol. 2021 Jul;40(7):936-948. doi: 10.1089/dna.2020.5911. Epub 2021 May 27.

Abstract

β-Amylase (BAM) is an important starch hydrolase, playing a role in a variety of plant growth and development processes. In this study, 22 gene family members (GFMs) were identified in quinoa (), an ancient crop gaining modern consumer acceptance because of its nutritional qualities. The genetic structure, phylogenetic and evolutionary relationships, and expression patterns of GFMs in different tissues, were analyzed. Phylogenetic analyses assigned the CqBAMs, AtBAMs, and OsBAMs into four clades. The gene family had expanded due to segmental duplication. RNA-seq analysis revealed expression of the duplicated pairs to be similar, with the expression of GFM pairs showing a degree of tissue specificity that was confirmed by reverse transcription quantitative PCR (RT-qPCR). Several GFMs were also responsive to abiotic stresses in shoots and/or roots. In conclusion, the gene family in quinoa was identified and systematically analyzed using bioinformatics and experimental methods. These results will help to elucidate the evolutionary relationship and biological functions of the gene family in quinoa.

摘要

β-淀粉酶(BAM)是一种重要的淀粉水解酶,在多种植物生长发育过程中发挥作用。在这项研究中,我们在藜麦()中鉴定了 22 个基因家族成员(GFMs),藜麦是一种古老的作物,由于其营养价值而受到现代消费者的认可。分析了 GFMs 在不同组织中的遗传结构、系统发育和进化关系以及表达模式。系统发育分析将 CqBAMs、AtBAMs 和 OsBAMs 分为四个分支。基因家族由于片段重复而扩张。RNA-seq 分析显示,重复对的表达相似,GFM 对的表达表现出一定的组织特异性,这通过反转录定量 PCR(RT-qPCR)得到了证实。一些 GFMs 还对地上部和/或根部的非生物胁迫有反应。总之,我们使用生物信息学和实验方法鉴定并系统分析了藜麦中的基因家族。这些结果将有助于阐明藜麦基因家族的进化关系和生物学功能。

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