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大规模鉴定、描述和. 中 NAC 转录因子的表达分析

Genome-Wide Identification, Characterization, and Expression Analysis of the NAC Transcription Factor in .

机构信息

College of Life Science, Shanxi Datong University, Datong 037009, China.

Research and Development Center of Agricultural Facility Technology, Shanxi Datong University, Datong 037009, China.

出版信息

Genes (Basel). 2019 Jun 30;10(7):500. doi: 10.3390/genes10070500.

Abstract

The NAC (NAM, ATAF, and CUC) family is one of the largest families of plant-specific transcription factors. It is involved in many plant growth and development processes, as well as abiotic/biotic stress responses. So far, little is known about the NAC family in . In the present study, a total of 90 were identified in quinoa (named as ) and phylogenetically divided into 14 distinct subfamilies. Different subfamilies showed diversities in gene proportions, exon-intron structures, and motif compositions. In addition, 28 duplication events were investigated, and a strong subfamily preference was found during the expansion in quinoa, indicating that the duplication event was not random across subfamilies during quinoa evolution. Moreover, the analysis of Ka/Ks (non-synonymous substitution rate/synonymous substitution rate) ratios suggested that the duplicated might have mainly experienced purifying selection pressure with limited functional divergence. Additionally, 11 selected showed significant tissue-specific expression patterns, and all the were positively regulated in response to salt stress. The result provided evidence for selecting candidate genes for further characterization in tissue/organ specificity and their functional involvement in quinoa's strong salinity tolerance.

摘要

NAC(NAM、ATAF 和 CUC)家族是植物特异性转录因子中最大的家族之一。它参与许多植物生长和发育过程,以及非生物/生物胁迫反应。到目前为止,关于 的 NAC 家族知之甚少。在本研究中,总共鉴定了 90 个藜麦(命名为 ),并在系统发育上分为 14 个不同的亚家族。不同的亚家族在基因比例、外显子-内含子结构和基序组成上表现出多样性。此外,研究了 28 个复制事件,发现藜麦中 扩张时存在强烈的亚家族偏好,表明在藜麦进化过程中,复制事件并不是在 亚家族之间随机发生的。此外,Ka/Ks(非同义替换率/同义替换率)比值的分析表明,复制的 可能主要经历了纯化选择压力,功能分化有限。此外,11 个选定的 表现出明显的组织特异性表达模式,所有的 都对盐胁迫呈正调控。研究结果为进一步鉴定组织/器官特异性的候选基因及其在藜麦耐盐性中的功能参与提供了证据。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/002a/6678211/47c2ef8766cb/genes-10-00500-g001.jpg

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