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一种新型裂解嗜麦芽窄食单胞菌的噬菌体BUCT555的生化和基因组特征

Biochemical and genomic characterization of a novel bacteriophage BUCT555 lysing Stenotrophomonas maltophilia.

作者信息

Han Pengjun, Hu Yunjia, An Xiaoping, Song Lihua, Fan Huahao, Tong Yigang

机构信息

College of Life Science and Technology, Beijing University of Chemical Technology, Beijing 100029, China.

College of Life Science and Technology, Beijing University of Chemical Technology, Beijing 100029, China.

出版信息

Virus Res. 2021 Aug;301:198465. doi: 10.1016/j.virusres.2021.198465. Epub 2021 May 28.

Abstract

Stenotrophomonas maltophilia is a common conditional pathogen, and it is naturally resistant to most commonly used clinical antibiotics. The bacteriophage is considered to be a potential antibiotic alternative for treating multi-drug-resistant bacteria. In this study, a bacteriophage BUCT555 was isolated from hospital sewage for lysing the clinical multi-drug resistant Stenotrophomonas maltophilia. Electron microscopy studies revealed this phage belongs to the Podoviridae family. The double-stranded DNA genome of bacteriophage BUCT555 is composed of 39,440 bp with a GC content of 61.43%. The genome contains 57 open reading frames, 14 of which had assigned functions, while no virulence related genes, antibiotic resistance genes or tRNA were identified. The burst size of BUCT555 was 204 pfu per infected cell. Structure proteins of bacteriophage BUCT555 generated by SDS-PAGE and HPLC-MS revealed that it contains seven proteins with molecular weight ranging from 19 to 89 kDa. BLASTn analysis showed that phage BUCT555 has 2% homology with other phages in NCBI database, suggesting BUCT555 is a new phage genus of Podoviridae that infects Stenotrophomonas maltophilia. Characterization of the bacteriophage BUCT555 enriches our knowledge about the diversity of Stenotrophomonas maltophilia bacteriophages.

摘要

嗜麦芽窄食单胞菌是一种常见的条件致病菌,对大多数常用临床抗生素天然耐药。噬菌体被认为是治疗多重耐药菌的一种潜在抗生素替代品。在本研究中,从医院污水中分离出一株噬菌体BUCT555,用于裂解临床多重耐药嗜麦芽窄食单胞菌。电子显微镜研究表明该噬菌体属于短尾噬菌体科。噬菌体BUCT555的双链DNA基因组由39,440个碱基对组成,GC含量为61.43%。该基因组包含57个开放阅读框,其中14个具有已确定的功能,未鉴定到毒力相关基因、抗生素抗性基因或tRNA。BUCT555的裂解量为每个感染细胞204个噬菌斑形成单位。通过SDS-PAGE和HPLC-MS分析噬菌体BUCT555的结构蛋白,结果显示它含有7种分子量在19至89 kDa之间的蛋白质。BLASTn分析表明,噬菌体BUCT555与NCBI数据库中的其他噬菌体具有2%的同源性,这表明BUCT555是一种感染嗜麦芽窄食单胞菌的新型短尾噬菌体科噬菌体属。对噬菌体BUCT555的特性研究丰富了我们对嗜麦芽窄食单胞菌噬菌体多样性的认识。

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