Institute of Biodiversity, Animal Health and Comparative Medicine, College of Medical, Veterinary and Life Sciences, University of Glasgow, Glasgow, UK.
MRC-University of Glasgow Centre for Virus Research, Glasgow, UK.
Nat Rev Microbiol. 2021 Jul;19(7):409-424. doi: 10.1038/s41579-021-00573-0. Epub 2021 Jun 1.
Although most mutations in the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) genome are expected to be either deleterious and swiftly purged or relatively neutral, a small proportion will affect functional properties and may alter infectivity, disease severity or interactions with host immunity. The emergence of SARS-CoV-2 in late 2019 was followed by a period of relative evolutionary stasis lasting about 11 months. Since late 2020, however, SARS-CoV-2 evolution has been characterized by the emergence of sets of mutations, in the context of 'variants of concern', that impact virus characteristics, including transmissibility and antigenicity, probably in response to the changing immune profile of the human population. There is emerging evidence of reduced neutralization of some SARS-CoV-2 variants by postvaccination serum; however, a greater understanding of correlates of protection is required to evaluate how this may impact vaccine effectiveness. Nonetheless, manufacturers are preparing platforms for a possible update of vaccine sequences, and it is crucial that surveillance of genetic and antigenic changes in the global virus population is done alongside experiments to elucidate the phenotypic impacts of mutations. In this Review, we summarize the literature on mutations of the SARS-CoV-2 spike protein, the primary antigen, focusing on their impacts on antigenicity and contextualizing them in the protein structure, and discuss them in the context of observed mutation frequencies in global sequence datasets.
虽然严重急性呼吸综合征冠状病毒 2 (SARS-CoV-2) 基因组中的大多数突变预计要么是有害的,并迅速清除,要么是相对中性的,但一小部分突变会影响功能特性,并可能改变感染性、疾病严重程度或与宿主免疫的相互作用。SARS-CoV-2 于 2019 年底出现,随后经历了大约 11 个月的相对进化停滞期。然而,自 2020 年底以来,SARS-CoV-2 的进化特征是出现了一系列突变,这些突变构成了“关注变体”,这些变体影响病毒的特性,包括传染性和抗原性,这可能是对人类群体不断变化的免疫特征的反应。有证据表明,一些 SARS-CoV-2 变体的血清中和作用降低;然而,为了评估这可能如何影响疫苗效果,还需要更深入地了解保护相关因素。尽管如此,制造商正在为疫苗序列的可能更新做准备,因此,与阐明突变表型影响的实验同时,对全球病毒群体的遗传和抗原变化进行监测至关重要。在这篇综述中,我们总结了 SARS-CoV-2 刺突蛋白(主要抗原)突变的文献,重点讨论了它们对抗原性的影响,并在蛋白质结构中对其进行了定位,同时还讨论了它们在全球序列数据集中观察到的突变频率的背景下的情况。