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蛋白质在高 [KCl] 浓度下保持水合作用,而与酸性氨基酸含量无关。

Proteins maintain hydration at high [KCl] concentration regardless of content in acidic amino acids.

机构信息

Department of Theory & Bio-Systems, Max Planck Institute of Colloids and Interfaces, Potsdam, Germany.

Department of Theory & Bio-Systems, Max Planck Institute of Colloids and Interfaces, Potsdam, Germany.

出版信息

Biophys J. 2021 Jul 6;120(13):2746-2762. doi: 10.1016/j.bpj.2021.05.015. Epub 2021 Jun 2.

Abstract

Proteins of halophilic organisms, which accumulate molar concentrations of KCl in their cytoplasm, have a much higher content in acidic amino acids than proteins of mesophilic organisms. It has been proposed that this excess is necessary to maintain proteins hydrated in an environment with low water activity, either via direct interactions between water and the carboxylate groups of acidic amino acids or via cooperative interactions between acidic amino acids and hydrated cations. Our simulation study of five halophilic proteins and five mesophilic counterparts does not support either possibility. The simulations use the AMBER ff14SB force field with newly optimized Lennard-Jones parameters for the interactions between carboxylate groups and potassium ions. We find that proteins with a larger fraction of acidic amino acids indeed have higher hydration levels, as measured by the concentration of water in their hydration shell and the number of water/protein hydrogen bonds. However, the hydration level of each protein is identical at low (b = 0.15 mol/kg) and high (b = 2 mol/kg) KCl concentrations; excess acidic amino acids are clearly not necessary to maintain proteins hydrated at high salt concentration. It has also been proposed that cooperative interactions between acidic amino acids in halophilic proteins and hydrated cations stabilize the folded protein structure and would lead to slower dynamics of the solvation shell. We find that the translational dynamics of the solvation shell is barely distinguishable between halophilic and mesophilic proteins; if such a cooperative effect exists, it does not have that entropic signature.

摘要

嗜盐生物的蛋白质在细胞质中积累摩尔浓度的 KCl,其酸性氨基酸含量远高于中温生物的蛋白质。有人提出,这种过剩是维持在低水活度环境中蛋白质水合的必要条件,要么是通过水与酸性氨基酸的羧酸盐基团之间的直接相互作用,要么是通过酸性氨基酸和水合阳离子之间的协同相互作用。我们对五种嗜盐蛋白和五种中温蛋白的模拟研究不支持这两种可能性。模拟使用 AMBER ff14SB 力场和新优化的羧酸盐基团与钾离子之间相互作用的 Lennard-Jones 参数。我们发现,酸性氨基酸比例较大的蛋白质确实具有较高的水合水平,这可以通过其水合壳中的水浓度和水/蛋白质氢键的数量来衡量。然而,在低 (b = 0.15 mol/kg) 和高 (b = 2 mol/kg) KCl 浓度下,每种蛋白质的水合水平都是相同的;在高盐浓度下,显然不需要额外的酸性氨基酸来维持蛋白质的水合状态。也有人提出,嗜盐蛋白中酸性氨基酸与水合阳离子之间的协同相互作用稳定了折叠的蛋白质结构,并导致溶剂化壳的动力学变慢。我们发现溶剂化壳的平移动力学在嗜盐和中温蛋白之间几乎无法区分;如果存在这种协同效应,它就不会具有这种熵特征。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9be6/8390907/38a9f873c8ee/gr1.jpg

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