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蛋白质水合壳对电解质浓度和蛋白质组成的敏感度如何?

How sensitive are protein hydration shells to electrolyte concentration and protein composition?

作者信息

Geraili Daronkola H, Moussa Bashar, Millet Óscar, Krenczyk Oktavian, Ortega-Quintanilla Gabriel, Petersen Poul B, Vila Verde Ana

机构信息

Faculty of Physics, University of Duisburg-Essen, Duisburg, Germany.

Faculty of Chemistry and Biochemistry, Ruhr-University Bochum, Bochum, Germany.

出版信息

Protein Sci. 2025 Jan;34(1):e5241. doi: 10.1002/pro.5241.

Abstract

Proteins of obligate halophilic organisms have an unusually high number of acidic amino acids, thought to enable them to function in multimolar KCl environments. Clarifying the molecular scale mechanisms by which this occurs is relevant for biotechnology, to enable enzymatic synthesis of economically important small molecules in salty environments and other environments with low water activity. Previous studies have suggested that acidic amino acids are necessary at high salt concentration to keep the proteins hydrated by competing with the ions in solution for available water (the "solvent-only" model). We use a combination of solvation shell spectroscopy and molecular dynamics simulations for in total 13 proteins, at high and low KCl concentration, to investigate this scenario. We show that the solvation shells of halophilic and mesophilic proteins of widely different amino acid compositions, net charges, sizes, and structure respond similarly, in terms of composition and of hydrogen bond network, to changes in KCl concentration. The results do not support the solvent-only model, and point to other mechanisms behind the acidity of halophilic proteins. Excess acidic amino acids may ensure protein solubility by the combined effects of having particularly favorable electrostatic interactions with the solvent, ensuring very short range protein-protein repulsion, and having smaller hydrophobic solvent accessible surface area than other charged amino acids. Also possible is that highly acidic proteins are well-tolerated-but not necessarily indispensable-in terms of stability and solubility.

摘要

专性嗜盐生物的蛋白质含有异常大量的酸性氨基酸,据认为这使它们能够在多摩尔浓度的氯化钾环境中发挥作用。阐明其发生的分子尺度机制对生物技术而言具有重要意义,有助于在含盐环境和其他水分活度较低的环境中酶促合成具有经济重要性的小分子。先前的研究表明,在高盐浓度下,酸性氨基酸是必要的,它们通过与溶液中的离子竞争可利用的水来保持蛋白质的水合状态(“仅溶剂”模型)。我们结合使用溶剂化壳光谱法和分子动力学模拟,对总共13种蛋白质在高氯化钾浓度和低氯化钾浓度下进行研究,以探究这种情况。我们发现,氨基酸组成、净电荷、大小和结构差异很大的嗜盐和嗜温蛋白质的溶剂化壳,在组成和氢键网络方面,对氯化钾浓度变化的响应相似。结果不支持仅溶剂模型,并指出嗜盐蛋白质酸性背后的其他机制。过量的酸性氨基酸可通过与溶剂具有特别有利的静电相互作用、确保非常短程的蛋白质 - 蛋白质排斥以及比其他带电荷氨基酸具有更小的疏水溶剂可及表面积等综合作用来确保蛋白质的溶解性。高度酸性的蛋白质在稳定性和溶解性方面也可能具有良好的耐受性,但不一定是不可或缺的。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e8bc/11645670/dae8379266a4/PRO-34-e5241-g002.jpg

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