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J Adv Res. 2019 Mar 20;19:29-37. doi: 10.1016/j.jare.2019.03.004. eCollection 2019 Sep.
3
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2.使用QIIME 2进行可重复、交互式、可扩展和可延伸的微生物组数据科学研究。
Nat Biotechnol. 2019 Aug;37(8):852-857. doi: 10.1038/s41587-019-0209-9.
4
Progress in and promise of bacterial quorum sensing research.细菌群体感应研究的进展与前景
Nature. 2017 Nov 15;551(7680):313-320. doi: 10.1038/nature24624.
5
Improved Bacterial 16S rRNA Gene (V4 and V4-5) and Fungal Internal Transcribed Spacer Marker Gene Primers for Microbial Community Surveys.用于微生物群落调查的改良细菌16S rRNA基因(V4和V4-5)及真菌内转录间隔区标记基因引物
mSystems. 2015 Dec 22;1(1). doi: 10.1128/mSystems.00009-15. eCollection 2016 Jan-Feb.
6
DADA2: High-resolution sample inference from Illumina amplicon data.DADA2:从Illumina扩增子数据进行高分辨率样本推断。
Nat Methods. 2016 Jul;13(7):581-3. doi: 10.1038/nmeth.3869. Epub 2016 May 23.
7
Roles of indole as an interspecies and interkingdom signaling molecule.吲哚作为一种种间和种属间信号分子的作用。
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8
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9
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Microbial communication leading to the activation of silent fungal secondary metabolite gene clusters.导致沉默真菌次级代谢物基因簇激活的微生物通讯。
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揭示植物源混合微生物培养物中的潜在种间信号因子。

Uncovering potential interspecies signaling factors in plant-derived mixed microbial culture.

机构信息

Biochemistry Ph.D. Program, The Graduate Center of CUNY, 365 5(th) Ave, New York, NY 10016, USA; Department of Chemistry, Hunter College of CUNY, 695 Park Ave, New York, NY 10065, USA.

Department of Biology, University of Texas of the Permian Basin, 4901 E. University Blvd, Odessa, TX, USA.

出版信息

Bioorg Med Chem. 2021 Jul 15;42:116254. doi: 10.1016/j.bmc.2021.116254. Epub 2021 Jun 4.

DOI:10.1016/j.bmc.2021.116254
PMID:34119697
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8273658/
Abstract

Microbes use signaling factors for intraspecies and interspecies communications. While many intraspecies signaling factors have been found and characterized, discovery of factors for interspecies communication is lagging behind. To facilitate the discovery of such factors, we explored the potential of a mixed microbial culture (MMC) derived from wheatgrass, in which heterogeneity of this microbial community might elicit signaling factors for interspecies communication. The stability of Wheatgrass MMC in terms of community structure and metabolic output was first characterized by 16S ribosomal RNA amplicon sequencing and liquid chromatography/mass spectrometry (LC/MS), respectively. In addition, detailed MS analyses led to the identification of 12-hydroxystearic acid (12-HSA) as one of the major metabolites produced by Wheatgrass MMC. Stereochemical analysis revealed that Wheatgrass MMC produces mostly the (R)-isomer, although a small amount of the (S)-isomer was also observed. Furthermore, 12-HSA was found to modulate planktonic growth and biofilm formation of various marine bacterial strains. The current study suggests that naturally derived MMCs could serve as a simple and reproducible platform to discover potential signaling factors for interspecies communication. In addition, the study indicates that hydroxylated long-chain fatty acids, such as 12-HSA, may constitute a new class of interspecies signaling factors.

摘要

微生物利用信号因子进行种内和种间通讯。虽然已经发现并描述了许多种内信号因子,但种间通讯因子的发现却落后了。为了促进这些因子的发现,我们探索了从小麦草中获得的混合微生物培养物(MMC)的潜力,这种微生物群落的异质性可能会引发种间通讯的信号因子。通过 16S 核糖体 RNA 扩增子测序和液相色谱/质谱(LC/MS)分别对小麦草 MMC 的群落结构和代谢产物的稳定性进行了描述。此外,详细的 MS 分析鉴定出 12-羟基硬脂酸(12-HSA)是小麦草 MMC 产生的主要代谢物之一。立体化学分析表明,尽管也观察到少量的(S)-异构体,但小麦草 MMC 主要产生(R)-异构体。此外,发现 12-HSA 可以调节各种海洋细菌菌株的浮游生长和生物膜形成。本研究表明,天然衍生的 MMC 可以作为一种简单且可重复的平台来发现潜在的种间通讯信号因子。此外,该研究表明,羟基化长链脂肪酸(如 12-HSA)可能构成一类新的种间信号因子。