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……的完整叶绿体基因组

The complete chloroplast genome of .

作者信息

Yang Xinli, Huang Xing, Tan Shibei, Chen Tao, Qin Xu, Chen Helong, Xi Jingen, Yi Kexian

机构信息

College of Tropical Crops, Hainan University, Haikou, PR China.

Environment and Plant Protection Institute, Chinese Academy of Tropical Agricultural Sciences, Haikou, PR China.

出版信息

Mitochondrial DNA B Resour. 2021 Jun 4;6(7):1855-1856. doi: 10.1080/23802359.2021.1935345.

DOI:10.1080/23802359.2021.1935345
PMID:34124368
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8183535/
Abstract

is one of the Agave cultivars for sisal fiber production around the tropical areas of the world. In the present study, we successfully sequenced and assembled its chloroplast genome. The full size of the genome is 157,268 bp with a GC content at 37.85%. The genome is constructed with a large single copy region (LSC, 85,894 bp), a pair of inverted repeat regions (IR, 26,573 bp) and a small single copy region (SSC, 18,228 bp). Besides, 86 protein-coding genes, 38 tRNAs and 8 rRNAs are annotated on the chloroplast genome. Phylogenetic result reveals that is closely related with and . H11648.

摘要

是世界热带地区用于生产剑麻纤维的龙舌兰品种之一。在本研究中,我们成功地对其叶绿体基因组进行了测序和组装。基因组全长157,268 bp,GC含量为37.85%。基因组由一个大单拷贝区域(LSC,85,894 bp)、一对反向重复区域(IR,26,573 bp)和一个小单拷贝区域(SSC,18,228 bp)组成。此外,叶绿体基因组上注释了86个蛋白质编码基因、38个tRNA和8个rRNA。系统发育结果表明,与 和 密切相关。H11648。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/816e/8183535/aa9597302511/TMDN_A_1935345_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/816e/8183535/aa9597302511/TMDN_A_1935345_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/816e/8183535/aa9597302511/TMDN_A_1935345_F0001_B.jpg

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本文引用的文献

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2
Identification of Chloroplast Envelope Proteins with Critical Importance for Cold Acclimation.鉴定对低温驯化具有关键重要性的叶绿体包膜蛋白。
Plant Physiol. 2020 Mar;182(3):1239-1255. doi: 10.1104/pp.19.00947. Epub 2020 Jan 13.
3
Complete chloroplast genomes of all six Hosta species occurring in Korea: molecular structures, comparative, and phylogenetic analyses.
韩国所有六种玉簪属植物的完整叶绿体基因组:分子结构、比较和系统发育分析。
BMC Genomics. 2019 Nov 9;20(1):833. doi: 10.1186/s12864-019-6215-y.
4
De Novo Transcriptome Assembly of H11648 by Illumina Sequencing and Identification of Cellulose Synthase Genes in Species.利用 Illumina 测序对 H11648 进行从头转录组组装,并鉴定 物种中的纤维素合酶基因。
Genes (Basel). 2019 Jan 30;10(2):103. doi: 10.3390/genes10020103.
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De novo assembly of Agave sisalana transcriptome in response to drought stress provides insight into the tolerance mechanisms.龙舌兰 sisalana 转录组的从头组装对干旱胁迫的响应提供了对耐受力机制的深入了解。
Sci Rep. 2019 Jan 23;9(1):396. doi: 10.1038/s41598-018-35891-6.
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Int J Genomics. 2018 Nov 22;2018:5716518. doi: 10.1155/2018/5716518. eCollection 2018.
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Mol Biol Evol. 2016 Jul;33(7):1870-4. doi: 10.1093/molbev/msw054. Epub 2016 Mar 22.