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(天门冬目:天门冬科:龙舌兰亚科)的完整叶绿体基因组。

The complete chloroplast genome of (Asparagales: Asparagaceae: Agavoideae).

作者信息

Xu Bochao, Tan Shibei, Qin Xu, Huang Xing, Xi Jingen, Chen Helong, Qin Jianfeng, Chen Tao, Yi Kexian

机构信息

School of Life Sciences, Hainan University, Haikou, PR China.

Environment and Plant Protection Institute, Chinese Academy of Tropical Agricultural Sciences, Haikou, PR China.

出版信息

Mitochondrial DNA B Resour. 2022 Aug 22;7(8):1519-1521. doi: 10.1080/23802359.2022.2109440. eCollection 2022.

DOI:10.1080/23802359.2022.2109440
PMID:36034534
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9415635/
Abstract

Trel. & W. Nowell (1933) has long been used for phytosteroid production, which is also one of the parents of the famous hybrid cultivar 11648 for sisal fiber production. However, its systematic position and phylogenetic relationship remains unknown at the chloroplast (cp) genome level. Therefore, we have sequenced and assembled the cp genome of via Illumina sequencing. The cp genome is 157,282 bp in length with a GC content of 37.84%. A large single-copy region of 85,899 bp, a small single-copy region of 18,233 bp, and inverted repeat regions of 26,575 bp were found in the cp genome. Based on the annotation, 86 protein-coding genes, eight rRNAs, and 38 tRNAs were identified in the cp genome with total lengths of 78,981 bp, 9050 bp, and 2867 bp, respectively. The phylogenetic tree indicates that is closely related with . H11648, , and .

摘要

特雷尔和W.诺韦尔(1933年)长期以来一直用于生产植物甾醇,它也是著名的用于剑麻纤维生产的杂交品种11648的亲本之一。然而,在叶绿体(cp)基因组水平上,其系统位置和系统发育关系仍然未知。因此,我们通过Illumina测序对其cp基因组进行了测序和组装。cp基因组长度为157,282 bp,GC含量为37.84%。在cp基因组中发现了一个85,899 bp的大单拷贝区域、一个18,233 bp的小单拷贝区域和26,575 bp的反向重复区域。基于注释,在cp基因组中鉴定出86个蛋白质编码基因、8个rRNA和38个tRNA,其总长度分别为78,981 bp、9050 bp和2867 bp。系统发育树表明,[具体物种名称缺失]与[具体物种名称缺失]密切相关。H11648、[具体物种名称缺失]和[具体物种名称缺失]。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c163/9415635/5bbcf3d3c576/TMDN_A_2109440_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c163/9415635/5bbcf3d3c576/TMDN_A_2109440_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c163/9415635/5bbcf3d3c576/TMDN_A_2109440_F0001_B.jpg

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