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厚嘴绿鸠的线粒体基因组及系统发育特征:该属的首个序列

The mitochondrial genome and phylogenetic characteristics of the Thick-billed Green-Pigeon, : the first sequence for the genus.

作者信息

Xu Nan, Ding Jiayu, Que Ziting, Xu Wei, Ye Wentao, Liu Hongyi

机构信息

College of Biology and the Environment, Nanjing Forestry University, Nanjing 210037, China Nanjing Forestry University Nanjing China.

出版信息

Zookeys. 2021 Jun 2;1041:167-182. doi: 10.3897/zookeys.1041.60150. eCollection 2021.

Abstract

Members of the genus (Columbidae) are widely distributed in southern Asia and the Indo-Malayan Region but their relationships are poorly understood. Better knowledge of the systematic status of this genus may help studies of historical biogeography and taxonomy. The complete mitochondrial genome of was characterized, a first for the genus. It is 17,414 base pairs in length, containing two rRNAs, 22 tRNAs, 13 protein coding genes (PCGs), and one D-loop with a primary structure that is similar to that found in most members of Columbidae. Most PCGs start with the common ATG codon but are terminated by different codons. The highest value of the Ka/Ks ratio within 13 PCGs was found in ATP8 with 0.1937, suggesting that PCGs of the mitochondrial genome tend to be conservative in Columbidae. Moreover, the phylogenetic relationships within Columbidae, which was based on sequences of 13 PCGs, showed that ( + ) were clustered in one clade, suggesting a potentially close relationship between and However, the monophyly of the subfamilies of Columbidae recognized by the Interagency Taxonomic Information System could not be corroborated. Hence, the position of the genus in the classification of Columbidae may have to be revised.

摘要

(鸽科)属的成员广泛分布于亚洲南部和印度 - 马来地区,但它们之间的关系却鲜为人知。更好地了解该属的系统地位可能有助于历史生物地理学和分类学的研究。已对(某种鸽)的完整线粒体基因组进行了表征,这在该属中尚属首次。其长度为17414个碱基对,包含两个rRNA、22个tRNA、13个蛋白质编码基因(PCGs)和一个D环,其一级结构与鸽科大多数成员中发现的结构相似。大多数PCGs以常见的ATG密码子起始,但由不同的密码子终止。在13个PCGs中,ATP8的Ka/Ks比值最高,为0.1937,这表明线粒体基因组的PCGs在鸽科中倾向于保守。此外,基于13个PCGs序列的鸽科内部系统发育关系表明,(某两个物种)聚在一个分支中,这表明(这两个物种)之间可能存在密切关系。然而,无法证实跨部门分类信息系统所认可的鸽科亚科的单系性。因此,(该属)在鸽科分类中的位置可能需要修订。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a2a8/8190031/455b1b2fb586/zookeys-1041-167-g001.jpg

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