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利用生物信息学分析鉴定吉非替尼耐药肺腺癌中的关键基因和通路

Identification of Key Genes and Pathways in Gefitinib-Resistant Lung Adenocarcinoma using Bioinformatics Analysis.

作者信息

Mao Kailin, Lin Fang, Zhang Yingai, Zhou Hailong

机构信息

Key Laboratory of Topical Biological Resources of Ministry of Education, Hainan University, Haikou, China.

School of Life Sciences, Hainan University, Haikou, China.

出版信息

Evol Bioinform Online. 2021 Jun 11;17:11769343211023767. doi: 10.1177/11769343211023767. eCollection 2021.

Abstract

Gefitinib resistance is a serious threat in the treatment of patients with non-small cell lung cancer (NSCLC). Elucidating the underlying mechanisms and developing effective therapies to overcome gefitinib resistance is urgently needed. The differentially expressed genes (DEGs) were screened from the gene expression profile GSE122005 between gefitinib-sensitive and resistant samples. GO and KEGG analyses were performed with DAVID. The protein-protein interaction (PPI) network was established to visualize DEGs and screen hub genes. The functional roles of CCL20 in lung adenocarcinoma (LUAD) were examined using gene set enrichment analysis (GSEA). Functional analysis revealed that the DEGs were mainly concentrated in inflammatory, cell chemotaxis, and PI3K signal regulation. Ten hub genes were identified based on the PPI network. The survival analysis of the hub genes showed that CCL20 had a significant effect on the prognosis of LUAD patients. GSEA analysis showed that CCL20 high expression group was mainly enriched in cytokine-related signaling pathways. In conclusion, our analysis suggests that changes in inflammation and cytokine-related signaling pathways are closely related to gefitinib resistance in patients with lung cancer. The CCL20 gene may promote the formation of gefitinib resistance, which may serve as a new biomarker for predicting gefitinib resistance in patients with lung cancer.

摘要

吉非替尼耐药是治疗非小细胞肺癌(NSCLC)患者的严重威胁。迫切需要阐明其潜在机制并开发有效的疗法来克服吉非替尼耐药。从吉非替尼敏感和耐药样本之间的基因表达谱GSE122005中筛选差异表达基因(DEG)。使用DAVID进行GO和KEGG分析。建立蛋白质-蛋白质相互作用(PPI)网络以可视化DEG并筛选枢纽基因。使用基因集富集分析(GSEA)检查CCL20在肺腺癌(LUAD)中的功能作用。功能分析表明,DEG主要集中在炎症、细胞趋化性和PI3K信号调节方面。基于PPI网络鉴定出10个枢纽基因。枢纽基因的生存分析表明,CCL20对LUAD患者的预后有显著影响。GSEA分析表明,CCL20高表达组主要富集在细胞因子相关信号通路中。总之,我们的分析表明,炎症和细胞因子相关信号通路的变化与肺癌患者的吉非替尼耐药密切相关。CCL20基因可能促进吉非替尼耐药的形成,这可能作为预测肺癌患者吉非替尼耐药的新生物标志物。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bf1c/8202261/48d9c66377ed/10.1177_11769343211023767-fig1.jpg

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