长链非编码RNA(LncRNA)Xist的生物学功能

Biological Function of Long Non-coding RNA (LncRNA) Xist.

作者信息

Wang Wenlun, Min Lu, Qiu Xinyuan, Wu Xiaomin, Liu Chuanyang, Ma Jiaxin, Zhang Dongyi, Zhu Lingyun

机构信息

Department of Biology and Chemistry, College of Liberal Arts and Sciences, National University of Defense Technology, Changsha, China.

出版信息

Front Cell Dev Biol. 2021 Jun 10;9:645647. doi: 10.3389/fcell.2021.645647. eCollection 2021.

Abstract

Long non-coding RNAs (lncRNAs) regulate gene expression in a variety of ways at epigenetic, chromatin remodeling, transcriptional, and translational levels. Accumulating evidence suggests that lncRNA X-inactive specific transcript (lncRNA Xist) serves as an important regulator of cell growth and development. Despites its original roles in X-chromosome dosage compensation, lncRNA Xist also participates in the development of tumor and other human diseases by functioning as a competing endogenous RNA (ceRNA). In this review, we comprehensively summarized recent progress in understanding the cellular functions of lncRNA Xist in mammalian cells and discussed current knowledge regarding the ceRNA network of lncRNA Xist in various diseases. Long non-coding RNAs (lncRNAs) are transcripts that are more than 200 nt in length and without an apparent protein-coding capacity (Furlan and Rougeulle, 2016; Maduro et al., 2016). These RNAs are believed to be transcribed by the approximately 98-99% non-coding regions of the human genome (Derrien et al., 2012; Fu, 2014; Montalbano et al., 2017; Slack and Chinnaiyan, 2019), as well as a large variety of genomic regions, such as exonic, tronic, and intergenic regions. Hence, lncRNAs are also divided into eight categories: Intergenic lncRNAs, Intronic lncRNAs, Enhancer lncRNAs, Promoter lncRNAs, Natural antisense/sense lncRNAs, Small nucleolar RNA-ended lncRNAs (sno-lncRNAs), Bidirectional lncRNAs, and non-poly(A) lncRNAs (Ma et al., 2013; Devaux et al., 2015; St Laurent et al., 2015; Chen, 2016; Quinn and Chang, 2016; Richard and Eichhorn, 2018; Connerty et al., 2020). A range of evidence has suggested that lncRNAs function as key regulators in crucial cellular functions, including proliferation, differentiation, apoptosis, migration, and invasion, by regulating the expression level of target genes via epigenomic, transcriptional, or post-transcriptional approaches (Cao et al., 2018). Moreover, lncRNAs detected in body fluids were also believed to serve as potential biomarkers for the diagnosis, prognosis, and monitoring of disease progression, and act as novel and potential drug targets for therapeutic exploitation in human disease (Jiang W. et al., 2018; Zhou et al., 2019a). Long non-coding RNA X-inactive specific transcript (lncRNA Xist) are a set of 15,000-20,000 nt sequences localized in the X chromosome inactivation center (XIC) of chromosome Xq13.2 (Brown et al., 1992; Debrand et al., 1998; Kay, 1998; Lee et al., 2013; da Rocha and Heard, 2017; Yang Z. et al., 2018; Brockdorff, 2019). Previous studies have indicated that lncRNA Xist regulate X chromosome inactivation (XCI), resulting in the inheritable silencing of one of the X-chromosomes during female cell development. Also, it serves a vital regulatory function in the whole spectrum of human disease (notably cancer) and can be used as a novel diagnostic and prognostic biomarker and as a potential therapeutic target for human disease in the clinic (Liu et al., 2018b; Deng et al., 2019; Dinescu et al., 2019; Mutzel and Schulz, 2020; Patrat et al., 2020; Wang et al., 2020a). In particular, lncRNA Xist have been demonstrated to be involved in the development of multiple types of tumors including brain tumor, Leukemia, lung cancer, breast cancer, and liver cancer, with the prominent examples outlined in Table 1. It was also believed that lncRNA Xist (Chaligne and Heard, 2014; Yang Z. et al., 2018) contributed to other diseases, such as pulmonary fibrosis, inflammation, neuropathic pain, cardiomyocyte hypertrophy, and osteoarthritis chondrocytes, and more specific details can be found in Table 2. This review summarizes the current knowledge on the regulatory mechanisms of lncRNA Xist on both chromosome dosage compensation and pathogenesis (especially cancer) processes, with a focus on the regulatory network of lncRNA Xist in human disease.

摘要

长链非编码RNA(lncRNA)在表观遗传、染色质重塑、转录和翻译水平上以多种方式调节基因表达。越来越多的证据表明,lncRNA X染色体失活特异性转录本(lncRNA Xist)是细胞生长和发育的重要调节因子。尽管lncRNA Xist最初在X染色体剂量补偿中发挥作用,但它也通过作为竞争性内源RNA(ceRNA)参与肿瘤和其他人类疾病的发生发展。在本综述中,我们全面总结了在理解lncRNA Xist在哺乳动物细胞中的细胞功能方面的最新进展,并讨论了lncRNA Xist在各种疾病中的ceRNA网络的现有知识。长链非编码RNA(lncRNA)是长度超过200 nt且无明显蛋白质编码能力的转录本(Furlan和Rougeulle,2016;Maduro等人,2016)。这些RNA被认为是由人类基因组中约98 - 99%的非编码区域转录而来(Derrien等人,2012;Fu,2014;Montalbano等人,2017;Slack和Chinnaiyan,2019),以及多种基因组区域,如外显子、内含子和基因间区域。因此,lncRNA也分为八类:基因间lncRNA、内含子lncRNA、增强子lncRNA、启动子lncRNA、天然反义/正义lncRNA、小核仁RNA末端lncRNA(sno-lncRNA)、双向lncRNA和非聚腺苷酸化lncRNA(Ma等人,2013;Devaux等人,2015;St Laurent等人,2015;Chen,2016;Quinn和Chang,2016;Richard和Eichhorn,2018;Connerty等人,2020)。一系列证据表明,lncRNA通过表观基因组、转录或转录后方法调节靶基因的表达水平,在关键的细胞功能如增殖、分化、凋亡、迁移和侵袭中起关键调节作用(Cao等人,2018)。此外,在体液中检测到的lncRNA也被认为可作为疾病诊断、预后和监测疾病进展的潜在生物标志物,并作为人类疾病治疗开发的新型潜在药物靶点(Jiang W.等人,2018;Zhou等人,2019a)。长链非编码RNA X染色体失活特异性转录本(lncRNA Xist)是一组15,000 - 20,000 nt的序列,位于X染色体Xq13.2的X染色体失活中心(XIC)(Brown等人,1992;Debrand等人,1998;Kay,1998;Lee等人,2013;da Rocha和Heard,2017;Yang Z.等人,2018;Brockdorff,2019)。先前的研究表明,lncRNA Xist调节X染色体失活(XCI),导致雌性细胞发育过程中一条X染色体的可遗传沉默。此外,它在人类疾病(尤其是癌症)的整个范围内发挥重要调节作用,并且在临床上可作为新型诊断和预后生物标志物以及人类疾病的潜在治疗靶点(Liu等人,2018b;Deng等人,2019;Dinescu等人,2019;Mutzel和Schulz,2020;Patrat等人,2020;Wang等人,2020a)。特别是,lncRNA Xist已被证明参与多种类型肿瘤的发生发展,包括脑肿瘤、白血病、肺癌、乳腺癌和肝癌,表1列出了突出的例子。还认为lncRNA Xist(Chaligne和Heard,2014;Yang Z.等人,2018)与其他疾病有关,如肺纤维化、炎症、神经性疼痛、心肌细胞肥大和骨关节炎软骨细胞,更具体的细节见表2。本综述总结了关于lncRNA Xist在染色体剂量补偿和发病机制(尤其是癌症)过程中的调节机制的现有知识,重点是lncRNA Xist在人类疾病中的调节网络。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/379b/8222981/3428c3c24e79/fcell-09-645647-g001.jpg

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