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新属新种,一种新型非海洋细菌,属于 群,同时将 (Zhong. 2015)重新分类为 新属,新组合。

gen. nov., sp. nov., a novel non-marine bacterium belonging to the group, and reclassification of (Zhong . 2015) as gen. nov., comb. nov.

机构信息

College of Forestry and Biotechnology, Zhejiang A&F University, Hangzhou 311300, PR China.

出版信息

Int J Syst Evol Microbiol. 2021 Jun;71(6). doi: 10.1099/ijsem.0.004859.

Abstract

An aerobic, Gram-stain-negative, non-sporulating, flagellated and spindle-like bacterium, designated HY14, was isolated from a pickle-processing factory wastewater sample. The isolate chemoheterotrophically grew at 4-42 °C (optimum, 35 °C) and pH 5.5-9.0 (optimum, pH 6.0-6.5). Salt was required for growth (0.5-12 % NaCl, w/v). A deep brown and water-soluble uncharacterized pigment was produced when grown in certain media. The predominant fatty acids (>5 %) included C, C 7, 11-methyl C 7 and C cyclo 8. The polar lipid profile consisted of diphosphatidylglycerol, phosphatidylglycerol, phosphatidylcholine, two unidentified aminolipids, two unidentified phospholipids, two unidentified glycolipids and five unknown lipids. The major isoprenoid quinone was ubiquinone-10. Pairwise alignment based on 16S rRNA gene sequences indicated that strain HY14 had the highest sequence similarity to genera (95.61-96.05 %) and (95.82 %). Phylogenetic analysis based on core genome illustrated that strain HY14 formed a monophyletic lineage with members of the genus in the clade of the group in the family . The core-gene average amino acid identity used to define bacterial genera by a threshold of 60-80 % was calculated to be 68.56-76.5 % between HY14 and closely related taxa. Several genomic characteristics, such as carrying two RuBisCO-mediated pathways and different osmoprotectant transport pathways, exhibited the genotypic discrepancies of strain HY14. Based on the polyphasic taxonomic characterization, strain HY14 is considered to represent a novel species of a novel genus belonging to the family , for which the name gen. nov., sp. nov. is proposed. The type strain is HY14 (=CGMCC 1.15973=KCTC 52499). (Zhong . 2015) is considered to diverge from at the genus level, and should be reassigned as a novel genus, for which the name gen. nov., comb. nov. is proposed.

摘要

一株好氧、革兰氏阴性、不产芽孢、具鞭毛的纺锤形细菌,被命名为 HY14,从泡菜加工厂废水样品中分离得到。该菌异养生长,生长温度为 4-42°C(最适温度为 35°C),pH 值为 5.5-9.0(最适 pH 值为 6.0-6.5)。生长需要盐(0.5-12%NaCl,w/v)。在某些培养基中生长时会产生深棕色和水溶性的未鉴定色素。主要脂肪酸(>5%)包括 C、C7、11-甲基 C7 和 C 环 8。极性脂谱由二磷脂酰甘油、磷脂酰甘油、磷脂酰胆碱、两种未鉴定的胺脂、两种未鉴定的磷脂、两种未鉴定的糖脂和五种未知脂组成。主要的异戊二烯醌是泛醌-10。基于 16S rRNA 基因序列的成对比对表明,菌株 HY14 与属(95.61-96.05%)和 (95.82%)具有最高的序列相似性。基于核心基因组的系统发育分析表明,菌株 HY14 在 组的 属中与成员形成一个单系分支。使用平均氨基酸同一性(定义细菌属的阈值为 60-80%)计算 HY14 与密切相关分类群之间的核心基因,结果为 68.56-76.5%。几个基因组特征,如携带两种 RuBisCO 介导的途径和不同的渗透保护剂运输途径,显示了菌株 HY14 的基因型差异。基于多相分类特征,菌株 HY14 被认为代表属于 科的一个新属的新型种,建议使用新属名 ,新种名. 模式菌株为 HY14(=CGMCC 1.15973=KCTC 52499)。(Zhong. 2015)被认为在属水平上与 属不同,应重新归类为一个新属,建议使用新属名 ,新组合名.

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