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天门冬科铃兰属内局限于细胞内的DNA转移事件:可能机制及作为生物地理学研究遗传标记的潜力

Intracellular DNA transfer events restricted to the genus Convallaria within the Asparagaceae family: Possible mechanisms and potential as genetic markers for biographical studies.

作者信息

Raman Gurusamy, Lee Eun Mi, Park SeonJoo

机构信息

Department of Life Sciences, Yeungnam University, Gyeongsan, Gyeongsan-buk 38541, Republic of Korea.

Department of Life Sciences, Yeungnam University, Gyeongsan, Gyeongsan-buk 38541, Republic of Korea.

出版信息

Genomics. 2021 Sep;113(5):2906-2918. doi: 10.1016/j.ygeno.2021.06.033. Epub 2021 Jun 26.

Abstract

Intracellular gene transfer among plant genomes is a common phenomenon. Due to their high conservation and high plastid membrane integrity, chloroplast (cp) genomes incorporate foreign genetic material very rarely. Convallaria is a small monocotyledonous genus consisting of C. keiskei, C. majalis and C. montana. Here, we characterized, analyzed and identified 3.3 and 3.7 kb of mitochondrial DNA sequences in the plastome (MCP) of C. majalis and C. montana, respectively. We identified 6 bp and 23 bp direct repeats and mitochondrial pseudogenes, with rps3, rps19 and rpl10 identified in the MCP region. Additionally, we developed novel plastid molecular genetic markers to differentiate Convallaria spp. based on 21 populations. BEAST and biogeographical analyses suggested that Convallaria separated into Eurasian and North American lineages during the middle Pliocene and originated in East Asia. Vicariance in the genus was followed by dispersal into Europe and southeastern North America. These analyses indicate that the MCP event was restricted to the genus Convallaria of Asparagaceae, in contrast to similar events that occurred in its common ancestors with other families of land plants. However, further mitochondrial and population studies are necessary to understand the integration of the MCP region and gene flow in the genus Convallaria.

摘要

植物基因组间的细胞内基因转移是一种常见现象。由于叶绿体(cp)基因组具有高度保守性和较高的质体膜完整性,其很少整合外来遗传物质。铃兰属是一个小型单子叶植物属,由铃兰、君影草和蒙大拿铃兰组成。在此,我们分别对君影草和蒙大拿铃兰质体基因组(MCP)中的3.3 kb和3.7 kb线粒体DNA序列进行了表征、分析和鉴定。我们鉴定出了6 bp和23 bp的直接重复序列以及线粒体假基因,在MCP区域鉴定出了rps3、rps19和rpl10。此外,我们开发了新的质体分子遗传标记,基于21个种群来区分铃兰属物种。贝叶斯进化分析采样树(BEAST)和生物地理学分析表明,铃兰属在上新世中期分为欧亚和北美谱系,起源于东亚。该属的间断分布之后是扩散到欧洲和北美东南部。这些分析表明,与陆地植物其他科的共同祖先中发生的类似事件相比,MCP事件仅限于天门冬科铃兰属。然而,需要进一步开展线粒体和种群研究,以了解铃兰属中MCP区域的整合情况和基因流动。

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