Department of Pharmacological Sciences, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
Department of Biochemistry and Molecular Biology, University of Texas Medical Branch, Galveston, TX, USA.
Nat Commun. 2021 Jun 29;12(1):4020. doi: 10.1038/s41467-021-24317-z.
PrimPol is a human DNA polymerase-primase that localizes to mitochondria and nucleus and bypasses the major oxidative lesion 7,8-dihydro-8-oxoguanine (oxoG) via translesion synthesis, in mostly error-free manner. We present structures of PrimPol insertion complexes with a DNA template-primer and correct dCTP or erroneous dATP opposite the lesion, as well as extension complexes with C or A as a 3'-terminal primer base. We show that during the insertion of C and extension from it, the active site is unperturbed, reflecting the readiness of PrimPol to accommodate oxoG(anti). The misinsertion of A opposite oxoG(syn) also does not alter the active site, and is likely less favorable due to lower thermodynamic stability of the oxoG(syn)•A base-pair. During the extension step, oxoG(syn) induces an opening of its base-pair with A or misalignment of the 3'-A primer terminus. Together, the structures show how PrimPol accurately synthesizes DNA opposite oxidatively damaged DNA in human cells.
PrimPol 是一种人类 DNA 聚合酶-引发酶,它定位于线粒体和细胞核,并通过跨损伤合成,以大多数无差错的方式绕过主要的氧化损伤 7,8-二氢-8-氧鸟嘌呤(oxoG)。我们展示了 PrimPol 插入复合物的结构,该复合物具有 DNA 模板-引物和正确的 dCTP 或错误的 dATP 与损伤相对,以及带有 C 或 A 作为 3'-末端引物碱基的延伸复合物。我们表明,在 C 的插入和从其延伸过程中,活性位点不受干扰,反映了 PrimPol 对 oxoG(anti)的适应能力。在 oxoG(syn) 处错配插入 A 也不会改变活性位点,并且由于 oxoG(syn)•A 碱基对的热力学稳定性较低,因此不太可能有利。在延伸步骤中,oxoG(syn) 诱导其与 A 的碱基对打开或 3'-A 引物末端的不对齐。总之,这些结构展示了 PrimPol 如何在人类细胞中准确地在氧化损伤的 DNA 上合成 DNA。