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通过表型性状和简单序列重复标记评估埃塞俄比亚芝麻种质的遗传变异性和群体结构

Genetic Variability and Population Structure of Ethiopian Sesame ( L.) Germplasm Assessed through Phenotypic Traits and Simple Sequence Repeats Markers.

作者信息

Teklu Desawi Hdru, Shimelis Hussein, Tesfaye Abush, Mashilo Jacob, Zhang Xiurong, Zhang Yanxin, Dossa Komivi, Shayanowako Admire Isaac Tichafa

机构信息

African Centre for Crop Improvement, University of KwaZulu-Natal, Pietermaritzburg 3209, South Africa.

Ethiopian Agricultural Transformation Agency, Addis Ababa 708, Ethiopia.

出版信息

Plants (Basel). 2021 Jun 2;10(6):1129. doi: 10.3390/plants10061129.

DOI:10.3390/plants10061129
PMID:34199342
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8226695/
Abstract

Ethiopia is one of the centers of genetic diversity of sesame ( L.). The sesame genetic resources present in the country should be explored for local, regional, and international genetic improvement programs to design high-performing and market-preferred varieties. This study's objective was to determine the extent of genetic variation among 100 diverse cultivated sesame germplasm collections of Ethiopia using phenotypic traits and simple sequence repeat (SSR) markers to select distinct and complementary genotypes for breeding. One hundred sesame entries were field evaluated at two locations in Ethiopia for agro-morphological traits and seed oil content using a 10 × 10 lattice design with two replications. Test genotypes were profiled using 27 polymorphic SSR markers at the Oil Crops Research Institute of the Chinese Academy of Agricultural Sciences. Analysis of variance revealed significant ( ≤ 0.05) entry by environment interaction for plant height, internode length, number of secondary branches, and grain yield. Genotypes such as Hirhir Kebabo Hairless-9, Setit-3, Orofalc ACC-2, Hirhir Humera Sel-6, ABX = 2-01-2, and Setit-1 recorded grain yield of >0.73 ton ha with excellent performance in yield component such as oil yield per hectare. Grain yield had positive and significant ( < 0.01) associations with oil yield ( = 0.99), useful for simultaneous selection for yield improvement in sesame. The SSR markers revealed gene diversity and polymorphic information content values of 0.30 and 0.25, respectively, showing that the tested sesame accessions were genetically diverse. Cluster analysis resolved the accessions into two groups, while population structure analysis revealed four major heterotic groups, thus enabling selection and subsequent crossing to develop breeding populations for cultivar development. Based on phenotypic and genomic divergence, the following superior and complementary genotypes: Hirhir Humera Sel-6, Setit-3, Hirhir Kebabo Hairless Sel-4, Hirhir Nigara 1st Sel-1, Humera-1 and Hirhir Kebabo Early Sel-1 (from cluster II-a), Hirhir kebabo hairless-9, NN-0029(2), NN0068-2 and Bawnji Fiyel Kolet, (from cluster II-b). The selected genotypes will serve as parents in the local breeding program in Ethiopia.

摘要

埃塞俄比亚是芝麻(Sesamum indicum L.)遗传多样性中心之一。该国现有的芝麻遗传资源应加以探索,以用于地方、区域和国际遗传改良计划,从而培育出高性能且受市场青睐的品种。本研究的目的是利用表型性状和简单序列重复(SSR)标记,确定埃塞俄比亚100份不同栽培芝麻种质资源的遗传变异程度,以便选择出独特且互补的基因型用于育种。采用10×10格子设计、两次重复,在埃塞俄比亚的两个地点对100份芝麻材料进行田间评估,测定其农艺形态性状和种子含油量。在中国农业科学院油料作物研究所,使用27个多态性SSR标记对测试基因型进行分析。方差分析显示,株高、节间长度、二级分枝数和籽粒产量在不同环境下存在显著的(P≤0.05)基因型与环境互作效应。Hirhir Kebabo Hairless-9、Setit-3、Orofalc ACC-2、Hirhir Humera Sel-6、ABX = 2-01-2和Setit-1等基因型的籽粒产量>0.73吨/公顷,在产量构成因素如每公顷油产量方面表现优异。籽粒产量与油产量呈显著正相关(P<0.01)(r = 0.99),有助于同时选择提高芝麻产量。SSR标记显示基因多样性和多态信息含量值分别为0.30和0.25,表明所测试的芝麻种质在遗传上具有多样性。聚类分析将种质分为两组,而群体结构分析揭示了四个主要杂种优势群,从而能够进行选择并随后杂交,以培育用于品种改良的育种群体。基于表型和基因组差异,筛选出以下优良且互补的基因型:Hirhir Humera Sel-6、Setit-3、Hirhir Kebabo Hairless Sel-4、Hirhir Nigara 1st Sel-1、Humera-1和Hirhir Kebabo Early Sel-1(来自聚类II-a),Hirhir kebabo hairless-9、NN-0029(2)、NN0068-2和Bawnji Fiyel Kolet(来自聚类II-b)。所选基因型将作为埃塞俄比亚当地育种计划的亲本。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/75f8/8226695/cd62f4cdc11f/plants-10-01129-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/75f8/8226695/1fc4d10534ca/plants-10-01129-g001a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/75f8/8226695/d9c72e3dcdfd/plants-10-01129-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/75f8/8226695/cd62f4cdc11f/plants-10-01129-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/75f8/8226695/1fc4d10534ca/plants-10-01129-g001a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/75f8/8226695/d9c72e3dcdfd/plants-10-01129-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/75f8/8226695/cd62f4cdc11f/plants-10-01129-g003.jpg

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