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严重急性呼吸综合征冠状病毒2(SARS-CoV-2)RNA在鼻咽拭子中的动态变化的流行病学意义

Epidemiological Significance of SARS-CoV-2 RNA Dynamic in Naso-Pharyngeal Swabs.

作者信息

Calistri Paolo, Danzetta Maria Luisa, Amato Laura, Cito Francesca, Di Giuseppe Alessandra, Zenobio Valentina, Morelli Daniela, Puglia Ilaria, Caporale Marialuigia, Scialabba Silvia, Savini Giovanni, Migliorati Giacomo, D'Alterio Nicola, Lorusso Alessio

机构信息

Istituto Zooprofilattico Sperimentale dell'Abruzzo e del Molise G. Caporale, 64100 Teramo, Italy.

出版信息

Microorganisms. 2021 Jun 10;9(6):1264. doi: 10.3390/microorganisms9061264.

Abstract

From 16 March to 15 December 2020, 132,357 naso-pharyngeal/oropharyngeal swabs were collected in the province of Teramo, Abruzzo Region, Italy, and tested for the presence of SARS-CoV-2 genomic RNA by a commercially available molecular assay. A total of 12,880 swabs resulted positive. For 8212 positive patients (4.150 women and 4.062 men) the median age was statistically different between women (median: 49.55 ± 23.9 of SD) and men (median: 48.35 ± 23.5 of SD) while no differences were found in the comparison between the cycle threshold for the N protein-encoding gene (C N) median values and gender. Differences were observed in the C N gene median values of swabs collected from March to September as well as in the pairwise comparison between September and October and between November and December. The C N gene median values observed in specific periods characterizing the SARS-CoV-2 epidemic in 2020 were also compared with the incidence of COVID-19 cases; a strong inverse correlation was highlighted (Pearson correlation coefficient = -0.978). Our findings confirm the usefulness of the C N values as an indirect detection parameter to monitor viral loads in the population.

摘要

2020年3月16日至12月15日,意大利阿布鲁佐大区泰拉莫省采集了132,357份鼻咽/口咽拭子,并通过一种商用分子检测方法检测了是否存在SARS-CoV-2基因组RNA。共有12,880份拭子检测呈阳性。对于8212名阳性患者(4150名女性和4062名男性),女性(中位数:49.55±标准差23.9)和男性(中位数:48.35±标准差23.5)的年龄中位数在统计学上存在差异,而在N蛋白编码基因(CN)中位数循环阈值与性别的比较中未发现差异。在3月至9月采集的拭子的CN基因中位数以及9月与10月之间、11月与12月之间的两两比较中观察到差异。还将2020年SARS-CoV-2疫情特定时期观察到的CN基因中位数与COVID-19病例的发病率进行了比较;突出显示出强烈的负相关(皮尔逊相关系数=-0.978)。我们的研究结果证实了CN值作为监测人群病毒载量的间接检测参数的有用性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/855d/8230487/b17a3f222e2e/microorganisms-09-01264-g001.jpg

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