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生物胁迫下黄瓜凝集素受体样激酶(LecRLK)基因家族的全基因组鉴定、多样化及表达分析

Genome-Wide Identification, Diversification, and Expression Analysis of Lectin Receptor-Like Kinase (LecRLK) Gene Family in Cucumber under Biotic Stress.

作者信息

Haider Muhammad Salman, De Britto Savitha, Nagaraj Geetha, Gurulingaiah Bhavya, Shekhar Ravikant, Ito Shin-Ichi, Jogaiah Sudisha

机构信息

Key Laboratory of Genetics and Fruit Development, College of Horticulture, Nanjing Agricultural University, Nanjing 210095, China.

Laboratory of Plant Healthcare and Diagnostics, P.G. Department of Biotechnology and Microbiology, Karnatak University, Dharwad 580003, India.

出版信息

Int J Mol Sci. 2021 Jun 19;22(12):6585. doi: 10.3390/ijms22126585.

Abstract

Members of the lectin receptor-like kinase (LecRLKs) family play a vital role in innate plant immunity. Few members of the LecRLKs family have been characterized in rice and , respectively. However, little literature is available about LecRLKs and their role against fungal infection in cucumber. In this study, 60 putative cucumber LecRLK (CsLecRLK) proteins were identified using genome-wide analysis and further characterized into L-type LecRLKs (24) and G-type LecRLKs (36) based on domain composition and phylogenetic analysis. These proteins were allocated to seven cucumber chromosomes and found to be involved in the expansion of the gene family. Subcellular localization of CsaLecRLK9 and CsaLecRLK12 showed green fluorescence signals in the plasma membrane of leaves. The transcriptional profiling of genes showed that L-type LecRLKs exhibited functional redundancy as compared to G-type LecRLKs. The qRT-PCR results indicated that both L- and G-type LecRLKs showed significant response against plant growth-promoting fungi (PGPF- Rifai), powdery mildew pathogen (PPM- (Castagne) V.P. Heluta), and combined (PGPF+PPM) treatments. The findings of this study contribute to a better understanding of the role of cucumber genes in response to PGPF, PPM, and PGPF+PPM treatments and lay the basis for the characterization of this important functional gene family.

摘要

凝集素受体样激酶(LecRLKs)家族成员在植物先天免疫中发挥着至关重要的作用。在水稻中,LecRLKs家族的成员分别很少被鉴定出来。然而,关于黄瓜中LecRLKs及其在抗真菌感染中的作用的文献很少。在本研究中,通过全基因组分析鉴定了60个假定的黄瓜LecRLK(CsLecRLK)蛋白,并根据结构域组成和系统发育分析进一步分为L型LecRLKs(24个)和G型LecRLKs(36个)。这些蛋白分布在黄瓜的7条染色体上,并且发现它们参与了该基因家族的扩展。CsaLecRLK9和CsaLecRLK12的亚细胞定位在叶片的质膜中显示出绿色荧光信号。基因的转录谱分析表明,与G型LecRLKs相比,L型LecRLKs表现出功能冗余。qRT-PCR结果表明,L型和G型LecRLKs对促进植物生长的真菌(PGPF - Rifai)、白粉病病原体(PPM - (Castagne)V.P. Heluta)以及联合(PGPF + PPM)处理均表现出显著响应。本研究结果有助于更好地理解黄瓜基因在响应PGPF、PPM和PGPF + PPM处理中的作用,并为表征这个重要的功能基因家族奠定基础。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d976/8234520/d0582842d26f/ijms-22-06585-g001.jpg

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