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黄瓜凝集素受体样激酶基因家族的全基因组鉴定和特征分析及其在不同处理下的表达谱分析

Genome-Wide Identification and Characterization of Lectin Receptor-Like Kinase Gene Family in Cucumber and Expression Profiling Analysis under Different Treatments.

机构信息

School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai 200240, China.

出版信息

Genes (Basel). 2020 Sep 2;11(9):1032. doi: 10.3390/genes11091032.

Abstract

Lectin receptor-like kinases (LecRLKs) are a class of membrane proteins found in plants that are involved in diverse functions, including plant development and stress responses. Although families have been identified in a variety of plants, a comprehensive analysis has not yet been undertaken in cucumber ( L.). In this study, 46 putative genes were identified in the cucumber genome, including 23 G-type and 22 L-type, and one C-type gene. They were unequally distributed on all seven chromosomes, with a clustering tendency. Most of the genes in the cucumber (Cs gene family lacked introns. In addition, there were many regulatory elements associated with phytohormones and stress on these genes' promoters. Transcriptome data demonstrated distinct expression patterns of genes in various tissues. Furthermore, we found that each member of the family had its own unique expression pattern under hormone and stress treatment by the quantitative real-time PCR (qRT-PCR) analysis. This study provides a better understanding of the character and function of the gene family in cucumber and opens up the possibility to exploring the roles that s might play in the life cycle of cucumber.

摘要

凝集素受体样激酶(LecRLKs)是一类存在于植物中的膜蛋白,参与多种功能,包括植物发育和应激反应。尽管在各种植物中已经鉴定出了多个 LecRLK 家族,但在黄瓜( Cucumis sativus L.)中尚未进行全面分析。本研究在黄瓜基因组中鉴定出 46 个推定的 LecRLK 基因,包括 23 个 G 型和 22 个 L 型,以及 1 个 C 型基因。它们在所有 7 条染色体上不均匀分布,具有聚类倾向。黄瓜 LecRLK 基因家族的大多数基因缺乏内含子。此外,在这些基因的启动子上存在许多与植物激素和应激相关的调控元件。转录组数据表明,在不同组织中 LecRLK 基因的表达模式存在明显差异。此外,我们通过定量实时 PCR(qRT-PCR)分析发现,在激素和应激处理下, LecRLK 家族的每个成员都有其独特的表达模式。本研究加深了我们对黄瓜 LecRLK 基因家族特征和功能的理解,并为探索它们在黄瓜生命周期中可能发挥的作用提供了可能性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/43c4/7564967/bef348cfbcae/genes-11-01032-g001.jpg

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