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前噬菌体佐藤和索尔的比较基因组学扩展了该属中发现的遗传多样性。

Comparative Genomics of Prophages Sato and Sole Expands the Genetic Diversity Found in the Genus .

作者信息

Gillis Annika, Hock Louise, Mahillon Jacques

机构信息

Laboratory of Food and Environmental Microbiology, Earth and Life Institute, UCLouvain, Croix du Sud 2, L7.05.12, B-1348 Louvain-la-Neuve, Belgium.

出版信息

Microorganisms. 2021 Jun 19;9(6):1335. doi: 10.3390/microorganisms9061335.

Abstract

Tectiviruses infecting the group represent part of the bacterial "plasmid repertoire" as they behave as linear plasmids during their lysogenic cycle. Several novel tectiviruses have been recently found infecting diverse strains belonging the lineage. Here, we report and analyze the complete genome sequences of phages Sato and Sole. The linear dsDNA genome of Sato spans 14,852 bp with 32 coding DNA sequences (CDSs), whereas the one of Sole has 14,444 bp comprising 30 CDSs. Both phage genomes contain inverted terminal repeats and no tRNAs. Genomic comparisons and phylogenetic analyses placed these two phages within the genus in the family . Additional comparative genomic analyses indicated that the "gene regulation-genome replication" module of phages Sato and Sole is more diverse than previously observed among other fully sequenced betatectiviruses, displaying very low sequence similarities and containing some ORFans. Interestingly, the ssDNA binding protein encoded in this genomic module in phages Sato and Sole has very little amino acid similarity with those of reference betatectiviruses. Phylogenetic analyses showed that both Sato and Sole represent novel tectivirus species, thus we propose to include them as two novel species in the genus .

摘要

感染该菌属的微小病毒是细菌“质粒库”的一部分,因为它们在溶原周期中表现为线性质粒。最近发现了几种新型微小病毒,感染属于该谱系的不同菌株。在此,我们报告并分析噬菌体佐藤和索尔的完整基因组序列。佐藤的线性双链DNA基因组跨度为14,852 bp,有32个编码DNA序列(CDS),而索尔的基因组有14,444 bp,包含30个CDS。两种噬菌体基因组都含有反向末端重复序列且没有tRNA。基因组比较和系统发育分析将这两种噬菌体归入微小病毒科的微小病毒属。进一步的比较基因组分析表明,噬菌体佐藤和索尔的“基因调控 - 基因组复制”模块比之前在其他全序列β微小病毒中观察到的更加多样,显示出非常低的序列相似性并且包含一些孤儿基因。有趣的是,噬菌体佐藤和索尔在这个基因组模块中编码的单链DNA结合蛋白与参考β微小病毒的蛋白氨基酸相似性很低。系统发育分析表明,佐藤和索尔都代表新型微小病毒物种,因此我们提议将它们作为微小病毒属的两个新物种纳入其中。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d73f/8234876/0fcc3e9ffe23/microorganisms-09-01335-g004.jpg

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