Pasomboon Pailin, Chumnanpuen Pramote, E-Kobon Teerasak
Department of Genetics, Faculty of Science, Kasetsart University, Bangkok, Thailand.
Omics Center for Agriculture, Bioresources, Food and Health, Kasetsart University (OmiKU), Bangkok, Thailand.
Bioinform Biol Insights. 2021 Jun 21;15:11779322211027406. doi: 10.1177/11779322211027406. eCollection 2021.
produces a capsule composed of different polysaccharides according to the capsular serotype (A, B, D, E, and F). Hyaluronic acid (HA) is a component of certain capsular types of this bacterium, especially capsular type A. Previously, 2 HA biosynthetic genes from a capsular type A strain were studied for the industrial-scale improvement of HA production. Molecular comparison of these genes across different capsular serotypes of has not been reported. This study aimed to compare 8 HA biosynthetic genes (, and ) of 22 strains (A:B:D:F = 6:6:6:4) with those of other organisms using sequence and structural bioinformatics analyses. These 8 genes showed a high level of within-species similarity (98%-99%) compared with other organisms. Only the last gene of 4 strains with capsular type F (HN07, PM70, HNF01, and HNF02) significantly differed from those of other strains (82%). Analysis of amino acid patterns together with phylogenetic results showed that the HA biosynthetic genes of the type A were closely related within the group. The genes in the capsular type F strain were notably similar to those of the capsular type A strain. Protein structural analysis supported structural similarities of the encoded enzymes between the strains of capsular types A, B, D, and F, except for the Pgm, GlmS, GlmU, and HyaD proteins. Our bioinformatics analytic workflow proposed that variations observed within these genes could be useful for genetic engineering-based improvement of hyaluronic acid-producing enzymes.
根据荚膜血清型(A、B、D、E和F)产生由不同多糖组成的荚膜。透明质酸(HA)是这种细菌某些荚膜类型的一种成分,尤其是A荚膜型。此前,对一株A荚膜型菌株的2个HA生物合成基因进行了研究,以实现HA生产的工业规模改进。尚未有关于这些基因在不同荚膜血清型之间的分子比较报道。本研究旨在通过序列和结构生物信息学分析,比较22株菌株(A:B:D:F = 6:6:6:4)的8个HA生物合成基因(、和)与其他生物体的基因。与其他生物体相比,这8个基因在种内显示出高水平的相似性(98%-99%)。只有4株F荚膜型菌株(HN07、PM70、HNF01和HNF02)的最后一个基因与其他菌株的基因有显著差异(82%)。氨基酸模式分析和系统发育结果表明,A型的HA生物合成基因在该组内密切相关。F荚膜型菌株中的基因与A荚膜型菌株的基因显著相似。蛋白质结构分析支持了A、B、D和F荚膜型菌株之间编码酶的结构相似性,但Pgm、GlmS、GlmU和HyaD蛋白除外。我们的生物信息学分析流程表明,在这些基因中观察到的变异可能有助于基于基因工程改进透明质酸生产酶。