Missel Julie Winkel, Salustros Nina, Becares Eva Ramos, Steffen Jonas Hyld, Laursen Amalie Gerdt, Garcia Angelica Struve, Garcia-Alai Maria M, Kolar Čeněk, Gourdon Pontus, Gotfryd Kamil
Department of Biomedical Sciences, Copenhagen University, Maersk Tower 7-9, Nørre Allé 14, DK-2200, Copenhagen N, Denmark.
European Molecular Biology Laboratory Hamburg, Notkestrasse 85, D-22607, Hamburg, Germany.
Curr Res Struct Biol. 2021 Mar 16;3:85-94. doi: 10.1016/j.crstbi.2021.03.002. eCollection 2021.
Membrane proteins (MPs) constitute a large fraction of the proteome, but exhibit physicochemical characteristics that impose challenges for successful sample production crucial for subsequent biophysical studies. In particular, MPs have to be extracted from the membranes in a stable form. Reconstitution into detergent micelles represents the most common procedure in recovering MPs for subsequent analysis. n-dodecyl-β-D-maltoside (DDM) remains one of the most popular conventional detergents used in production of MPs. Here we characterize the novel DDM analogue 4-trans-(4-trans-propylcyclohexyl)-cyclohexyl α-maltoside (t-PCCαM), possessing a substantially lower critical micelle concentration (CMC) than the parental compound that represents an attractive feature when handling MPs. Using three different types of MPs of human and prokaryotic origin, , a channel, a primary and a secondary active transporter, expressed in yeast and bacterial host systems, respectively, we investigate the performance of t-PCCαM in solubilization and affinity purification together with its capacity to preserve native fold and activity. Strikingly, t-PCCαM displays favorable behavior in extracting and stabilizing the three selected targets. Importantly, t-PCCαM promoted extraction of properly folded protein, enhanced thermostability and provided negatively-stained electron microscopy samples of promising quality. All-in-all, t-PCCαM emerges as competitive surfactant applicable to a broad portfolio of challenging MPs for downstream structure-function analysis.
膜蛋白(MPs)占蛋白质组的很大一部分,但具有的物理化学特性给成功制备样品带来了挑战,而这些样品对于后续的生物物理研究至关重要。特别是,MPs必须以稳定的形式从膜中提取出来。重组成去污剂胶束是回收MPs用于后续分析的最常见方法。正十二烷基-β-D-麦芽糖苷(DDM)仍然是生产MPs时最常用的传统去污剂之一。在此,我们对新型DDM类似物4-反式-(4-反式-丙基环己基)-环己基α-麦芽糖苷(t-PCCαM)进行了表征,其临界胶束浓度(CMC)比母体化合物低得多,这在处理MPs时是一个吸引人的特性。我们分别使用在酵母和细菌宿主系统中表达的三种不同类型的人和原核生物来源的MPs,即一种通道蛋白、一种初级和一种次级主动转运蛋白,研究了t-PCCαM在溶解和亲和纯化方面的性能,以及其保持天然折叠和活性的能力。令人惊讶的是,t-PCCαM在提取和稳定这三个选定目标方面表现出良好的行为。重要的是,t-PCCαM促进了正确折叠蛋白的提取,提高了热稳定性,并提供了质量有望的负染电子显微镜样品。总的来说,t-PCCαM是一种有竞争力的表面活性剂,适用于广泛的具有挑战性的MPs,用于下游的结构-功能分析。