Suppr超能文献

基于变分确定的本征值的扩散势垒穿越率。

Diffusive barrier crossing rates from variationally determined eigenvalues.

作者信息

Berezhkovskii Alexander M, Gopich Irina V, Szabo Attila

机构信息

Mathematical and Statistical Computing Laboratory, Office of Intramural Research, Center for Information Technology, National Institutes of Health, Bethesda, Maryland 20892, USA.

Laboratory of Chemical Physics, National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Bethesda, Maryland 208192, USA.

出版信息

J Chem Phys. 2021 Jul 21;155(3):034104. doi: 10.1063/5.0058066.

Abstract

Kramers' procedure for calculating the rate of activated processes involves partitioning space into reactant, barrier, and product regions by introducing two dividing surfaces. Then, a nonequilibrium steady state is established by injecting particles on one surface and removing them when they reach the other. The rate is obtained as the ratio of the steady-state flux between the surfaces and the population of the initial well. An alternative procedure that seems less artificial is to estimate the first non-zero eigenvalue of the operator that describes the dynamics and then equate its magnitude to the sum of the forward and backward rate constants. Here, we establish the relationship between these approaches for diffusive dynamics, starting with the variational principle for the eigenvalue of interest and then using a trial function involving two adjustable surfaces. We show how Kramers' flux-over-population expression for the rate constant can be obtained from our variationally determined eigenvalue in the special case where the reactant and product regions are separated by a high barrier. This work exploits the modern theory of activated rate processes where the committor (the probability of reaching one dividing surface before the other) plays a central role. Surprisingly, our upper bound for the eigenvalue can be expressed solely in terms of mean first-passage times and the mean transition-path time between the two dividing surfaces.

摘要

克莱默斯计算活化过程速率的方法是通过引入两个分隔面将空间划分为反应物、势垒和产物区域。然后,通过在一个表面注入粒子并在它们到达另一个表面时将其移除来建立非平衡稳态。速率通过表面之间的稳态通量与初始阱中粒子数的比值获得。另一种似乎不那么人为的方法是估计描述动力学的算符的第一个非零本征值,然后将其大小等同于正向和反向速率常数之和。在此,我们从感兴趣的本征值的变分原理出发,然后使用涉及两个可调表面的试探函数,建立了这些方法对于扩散动力学的关系。我们展示了在反应物和产物区域被高势垒分隔的特殊情况下,如何从我们通过变分确定的本征值得到克莱默斯速率常数的通量与粒子数表达式。这项工作利用了活化速率过程的现代理论,其中反应坐标(在到达另一个分隔面之前到达一个分隔面的概率)起着核心作用。令人惊讶的是,我们本征值的上限可以仅用平均首次通过时间和两个分隔面之间的平均跃迁路径时间来表示。

相似文献

7
Approach to quantum Kramers' equation and barrier crossing dynamics.量子克莱默斯方程及势垒穿越动力学的研究方法。
Phys Rev E Stat Nonlin Soft Matter Phys. 2002 Feb;65(2 Pt 1):021109. doi: 10.1103/PhysRevE.65.021109. Epub 2002 Jan 23.

引用本文的文献

本文引用的文献

3
Diffusion along the splitting/commitment probability reaction coordinate.沿着分裂/承诺概率反应坐标的扩散。
J Phys Chem B. 2013 Oct 24;117(42):13115-9. doi: 10.1021/jp403043a. Epub 2013 Jul 3.
4
Rate theories for biologists.生物学家的率论。
Q Rev Biophys. 2010 May;43(2):219-93. doi: 10.1017/S0033583510000120. Epub 2010 Aug 9.

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验