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通过基因组草图测序揭示新型蓝藻 Jacksonvillea sp. ISTCYN1 的特性。

Unravelling the attributes of novel cyanobacteria Jacksonvillea sp. ISTCYN1 by draft genome sequencing.

机构信息

Amity Institute of Microbial Technology, Amity University, Uttar Pradesh, Sector-125, Noida 201303, India.

School of Environmental Sciences, Jawaharlal Nehru University, New Delhi, Delhi 110067, India.

出版信息

Bioresour Technol. 2021 Oct;337:125473. doi: 10.1016/j.biortech.2021.125473. Epub 2021 Jun 27.

DOI:10.1016/j.biortech.2021.125473
PMID:34320753
Abstract

Filamentous cyanobacteria, Jacksonvillea sp. ISTCYN1 was isolated from agriculture field and cultured in BG-11 medium. This study, report the genome sequence of cyanobacteria Jacksonvillea thatto the best of our knowledgeis the firstgenome sequenceof thisgenus. The 5.7 MB draft genome sequence of this cyanobacterium contains 5134 protein-coding genes. The phylogenetic tree was constructed based on genome and Desertifilum sp. IPPAS B-1220 validated the closest relationship with Jacksonvillea sp. ISTCYN1. The growth of strain ISTCYN1 has been reported in the presence of different types of plastic when used as a sole carbon source. SEM analysis revealed biofilm formation by cyanobacterial strain ISTCYN1 on the surface of high and low-density polyethylene and polypropylene. In the presence of these plastics, EPS production has also been reported by this strain. Whole genome sequence analysis reveals the presence of many genes involved in biofilm formation. The presence of key enzymes responsible for plastic degradation laccase, esterase, lipase, thioesterase, and peroxidase have been predicted in the genome analysis. Genome analysis also provides insight into the genes involved in biotin biosynthetic pathways. Furthermore, the presence of many selenoproteins reveals the selenium acquisition by this cyanobacterium.

摘要

丝状蓝藻 Jacksonvillea sp. ISTCYN1 从农业田地中分离出来,并在 BG-11 培养基中培养。本研究报告了蓝藻 Jacksonvillea 的基因组序列,据我们所知,这是该属的第一个基因组序列。该蓝藻的 5.7MB 草图基因组序列包含 5134 个编码蛋白的基因。基于基因组构建的系统发育树并结合 Desertifilum sp. IPPAS B-1220 验证了与 Jacksonvillea sp. ISTCYN1 的最密切关系。当用作唯一碳源时,已报道菌株 ISTCYN1 在存在不同类型塑料的情况下的生长情况。SEM 分析表明,蓝藻菌株 ISTCYN1 在高密度和低密度聚乙烯以及聚丙烯表面形成生物膜。在这些塑料的存在下,该菌株还报告了 EPS 的产生。全基因组序列分析表明存在许多参与生物膜形成的基因。在基因组分析中预测了负责塑料降解的关键酶,如漆酶、酯酶、脂肪酶、硫酯酶和过氧化物酶。基因组分析还提供了有关生物素生物合成途径相关基因的信息。此外,许多硒蛋白的存在表明该蓝藻获得了硒。

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