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Natural Product Biosynthetic Diversity and Comparative Genomics of the Cyanobacteria.蓝藻的天然产物生物合成多样性和比较基因组学。
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Trimmomatic: a flexible trimmer for Illumina sequence data.Trimmomatic：一款适用于 Illumina 测序数据的灵活修剪工具。
Bioinformatics. 2014 Aug 1;30(15):2114-20. doi: 10.1093/bioinformatics/btu170. Epub 2014 Apr 1.
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QUAST: quality assessment tool for genome assemblies.QUAST：基因组组装质量评估工具。
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SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.SPAdes：一种新的基因组组装算法及其在单细胞测序中的应用
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antiSMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences.antiSMASH：快速识别、注释和分析细菌和真菌基因组序列中次生代谢产物生物合成基因簇。
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Characterization of four superoxide dismutase genes from a filamentous cyanobacterium.丝状蓝细菌中四个超氧化物歧化酶基因的表征
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耐热蓝细菌沙漠丝菌属IPPAS B-1220的基因组序列草图

Draft Genome Sequence of the Thermotolerant Cyanobacterium Desertifilum sp. IPPAS B-1220.

作者信息

Mironov Kirill S, Sinetova Maria A, Bolatkhan Kenzhegul, Zayadan Bolatkhan K, Ustinova Vera V, Kupriyanova Elena V, Skrypnik Alexandra N, Gogoleva Natalya E, Gogolev Yuriy V, Los Dmitry A

机构信息

Institute of Plant Physiology, Russian Academy of Science, Moscow, Russia

Institute of Plant Physiology, Russian Academy of Science, Moscow, Russia.

出版信息

Genome Announc. 2016 Nov 17;4(6):e01304-16. doi: 10.1128/genomeA.01304-16.

DOI:10.1128/genomeA.01304-16
PMID:27856594
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5114386/
Abstract

Here, we report the draft genome of the filamentous cyanobacterium Desertifilum sp. strain IPPAS B-1220, isolated from Lake Shar-Nuur, Mongolia. The genome of 6.1 Mb codes for 5,113 genes. Genome mining revealed 10 clusters for the synthesis of bioactive compounds (nonribosomal peptides, polyketides, bacteriocins, and lantipeptides) with potential biotechnological or medical importance.

摘要

在此，我们报告了从蒙古国沙尔-努尔湖分离出的丝状蓝细菌沙漠丝菌属菌株IPPAS B-1220的基因组草图。该基因组大小为6.1 Mb，编码5113个基因。基因组挖掘揭示了10个用于合成具有潜在生物技术或医学重要性的生物活性化合物（非核糖体肽、聚酮化合物、细菌素和羊毛硫肽）的基因簇。