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本文引用的文献
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Changes in lactic acid bacteria and components of Awa-bancha by anaerobic fermentation.
Biosci Biotechnol Biochem. 2020 Sep;84(9):1921-1935. doi: 10.1080/09168451.2020.1771677. Epub 2020 May 28.
2
BUSCO: Assessing Genome Assembly and Annotation Completeness.
Methods Mol Biol. 2019;1962:227-245. doi: 10.1007/978-1-4939-9173-0_14.
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Regional characteristics of group strains isolated from two kinds of Japanese post-fermented teas, Ishizuchi-kurocha and Awa-bancha.
Biosci Microbiota Food Health. 2019;38(1):11-22. doi: 10.12938/bmfh.18-005. Epub 2018 Oct 6.
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fastp: an ultra-fast all-in-one FASTQ preprocessor.
Bioinformatics. 2018 Sep 1;34(17):i884-i890. doi: 10.1093/bioinformatics/bty560.
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Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads.
PLoS Comput Biol. 2017 Jun 8;13(6):e1005595. doi: 10.1371/journal.pcbi.1005595. eCollection 2017 Jun.
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DFAST and DAGA: web-based integrated genome annotation tools and resources.
Biosci Microbiota Food Health. 2016;35(4):173-184. doi: 10.12938/bmfh.16-003. Epub 2016 Jul 14.
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Bandage: interactive visualization of de novo genome assemblies.
Bioinformatics. 2015 Oct 15;31(20):3350-2. doi: 10.1093/bioinformatics/btv383. Epub 2015 Jun 22.
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QUAST: quality assessment tool for genome assemblies.
Bioinformatics. 2013 Apr 15;29(8):1072-5. doi: 10.1093/bioinformatics/btt086. Epub 2013 Feb 19.
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