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从传统发酵大米中分离出的戊糖乳杆菌菌株的基因组序列草图

Draft genome sequence of a Lactiplantibacillus pentosus strain isolated from traditionally fermented rice.

作者信息

Cheruvari Athira, Kammara Rajagopal

机构信息

Department of Biochemistry, Central Food Technological Research Institute, Mysore 570020, India.

Academy of Scientific and Innovative Research, Ghaziabad 201002, India.

出版信息

Access Microbiol. 2024 Oct 3;6(10). doi: 10.1099/acmi.0.000796.v3. eCollection 2024.

Abstract

is a probiotic bacterium reported to be present in various fermented foods, such as fermented olives, and it significantly influences human health. The present study concerns a lactic acid bacterial strain designated krglsrbmofpi2, isolated from traditional fermented rice, and which has been shown to have an assortment of beneficial attributes. Using Illumina technologies, we have sequenced and investigated the whole genome sequence of krglsrbmofpi2 to understand its functionality and safety. The chromosomal genome was 3.7 Mb in size with 46% GC content and 3192 protein-coding genes. Additional extensive bioinformatics investigations were carried out involving whole genome sequence assembly and annotation.

摘要

是一种据报道存在于各种发酵食品(如发酵橄榄)中的益生菌,它对人类健康有重大影响。本研究涉及一株从传统发酵大米中分离出的乳酸菌菌株,命名为krglsrbmofpi2,已证明其具有多种有益特性。我们使用Illumina技术对krglsrbmofpi2的全基因组序列进行了测序和研究,以了解其功能和安全性。染色体基因组大小为3.7 Mb,GC含量为46%,有3192个蛋白质编码基因。还进行了额外广泛的生物信息学研究,包括全基因组序列组装和注释。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5f15/11449135/74e4b2c8698b/acmi-6-00796-g001.jpg

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