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A novel function for cyclin D1 as a transcriptional role in oncogenesis and tumor development by ChIP-Seq and RNA-Seq.

作者信息

Xiong Yudi, Wang Yuan, Li Tianqi, Yu Xiaoyan, Zeng Yangyang, Xiao Guohui, Zhou Fuxiang, Zhou Yunfeng

机构信息

Hubei Cancer Clinical Study Center, Hubei Key Laboratory of Tumor Biological Behaviors, Zhongnan Hospital, Wuhan University, Wuhan, China.

Department of Radiation Oncology and Medical Oncology, Zhongnan Hospital, Wuhan University, Wuhan, China.

出版信息

J Cancer. 2021 Jun 26;12(17):5181-5192. doi: 10.7150/jca.52909. eCollection 2021.


DOI:10.7150/jca.52909
PMID:34335935
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8317529/
Abstract

Aberrations in cell cycle control is defined as one of the hallmarks of cancer, while cyclin D1 is an essential protein to cell cycle which promote G1 phase into S phase, and frequently overexpressed in many human cancers. However, new functions have been identified in transgenic mice models, including the transcription of genome, the development of chromosome instability and DNA repair. In this research, our aim is to find the function of cyclin D1 in transcription in human cancers. The correlation of the cyclin D1 expression levels and prognosis of cervical cancer patients were analyzed in tissue microarray (TMA) cohort. We chose C33A as our main research object. Using chromatin immunoprecipitation sequencing (ChIP-seq) coupled with RNA sequencing (RNA-seq), to find out the genes differentially expressed in C33A, cyclin D1 knock-in C33A and cyclin D1 knock-down C33A. We found that upregulation of cyclin D1 was associated with shorter overall survival (OS) and disease-free survival (DFS). Functionally, we identified 422 genes differentially expressed through analysis of the results of ChIP-seq and RNA-seq. These genes are highly enriched in Gene Ontology categories and involve in diverse cellular functions via KEGG classification, including replication and repair, signal transduction, cell growth and death. These findings suggested that the expression of cyclin D1 was associated with the prognosis of patients with cervical cancer. Cyclin D1 can serve both to activate and downregulate gene expression as a transcriptional role directly binding with genome DNA, which means that cyclin D1 may be a key protein during oncogenesis and tumor development.

摘要
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5772/8317529/63c58e90cdff/jcav12p5181g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5772/8317529/9cf51780d099/jcav12p5181g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5772/8317529/6e4dd5068502/jcav12p5181g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5772/8317529/d43cd6198807/jcav12p5181g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5772/8317529/4dafbc75b289/jcav12p5181g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5772/8317529/8b99321527da/jcav12p5181g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5772/8317529/63c58e90cdff/jcav12p5181g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5772/8317529/9cf51780d099/jcav12p5181g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5772/8317529/6e4dd5068502/jcav12p5181g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5772/8317529/d43cd6198807/jcav12p5181g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5772/8317529/4dafbc75b289/jcav12p5181g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5772/8317529/8b99321527da/jcav12p5181g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5772/8317529/63c58e90cdff/jcav12p5181g006.jpg

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[1]
A novel function for cyclin D1 as a transcriptional role in oncogenesis and tumor development by ChIP-Seq and RNA-Seq.

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引用本文的文献

[1]
Cyclin D1 overexpression induces replication stress and microhomology-mediated end-joining dependence in mantle cell lymphoma.

J Clin Invest. 2025-7-3

[2]
Impact of G1 phase kinetics on the acquisition of stemness in cancer cells: the critical role of cyclin D.

Mol Biol Rep. 2025-2-14

[3]
EVI1 exerts distinct roles in AML via ERG and cyclin D1 promoting a chemoresistant and immune-suppressive environment.

Blood Adv. 2023-4-25

[4]
CDC42EP3 promotes glioma progression via regulation of CCND1.

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本文引用的文献

[1]
Global, Regional, and National Cancer Incidence, Mortality, Years of Life Lost, Years Lived With Disability, and Disability-Adjusted Life-Years for 29 Cancer Groups, 1990 to 2017: A Systematic Analysis for the Global Burden of Disease Study.

JAMA Oncol. 2019-12-1

[2]
Ribociclib, a selective cyclin D kinase 4/6 inhibitor, inhibits proliferation and induces apoptosis of human cervical cancer in vitro and in vivo.

Biomed Pharmacother. 2019-2-18

[3]
Arrested Developments: CDK4/6 Inhibitor Resistance and Alterations in the Tumor Immune Microenvironment.

Clin Cancer Res. 2018-10-4

[4]
Cyclin E overexpression confers resistance to the CDK4/6 specific inhibitor palbociclib in gastric cancer cells.

Cancer Lett. 2018-5-3

[5]
The Strange Case of CDK4/6 Inhibitors: Mechanisms, Resistance, and Combination Strategies.

Trends Cancer. 2017-1

[6]
Ribociclib as First-Line Therapy for HR-Positive, Advanced Breast Cancer.

N Engl J Med. 2016-11-3

[7]
Treating cancer with selective CDK4/6 inhibitors.

Nat Rev Clin Oncol. 2016-3-31

[8]
FDA Approval: Palbociclib for the Treatment of Postmenopausal Patients with Estrogen Receptor-Positive, HER2-Negative Metastatic Breast Cancer.

Clin Cancer Res. 2015-8-31

[9]
HISAT: a fast spliced aligner with low memory requirements.

Nat Methods. 2015-4

[10]
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Int J Cancer. 2014-10-9

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