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卵巢癌的单细胞 RNA 测序:前景与挑战。

Single-Cell RNA Sequencing of Ovarian Cancer: Promises and Challenges.

机构信息

Division of Gynecologic Oncology, Department of Obstetrics, Gynecology and Women's Health, University of Minnesota School of Medicine, Minneapolis, MN, USA.

Masonic Cancer Center, University of Minnesota, Minneapolis, MN, USA.

出版信息

Adv Exp Med Biol. 2021;1330:113-123. doi: 10.1007/978-3-030-73359-9_7.

DOI:10.1007/978-3-030-73359-9_7
PMID:34339033
Abstract

Ovarian cancer remains the leading cause of death from gynecologic malignancy in the Western world. Tumors are comprised of heterogeneous populations of various cancer, immune, and stromal cells; it is hypothesized that rare cancer stem cells within these subpopulations lead to disease recurrence and treatment resistance. Technological advances now allow for the analysis of tumor genomes and transcriptomes at the single-cell level, which provides the resolution to potentially identify these rare cancer stem cells within the larger tumor.In this chapter, we review the evolution of next-generation RNA sequencing techniques, the methodology of single-cell isolation and sequencing, sequencing data analysis, and the potential applications in ovarian cancer. We also summarize the current published work using single-cell sequencing in ovarian cancer.By utilizing this novel technique to characterize the gene expression of rare subpopulations, new targets and treatment pathways may be identified in ovarian cancer to change treatment paradigms.

摘要

卵巢癌仍然是西方妇科恶性肿瘤死亡的主要原因。肿瘤由各种癌症、免疫和基质细胞组成的异质群体组成;据推测,这些亚群中的稀有癌症干细胞导致疾病复发和治疗耐药。技术进步现在允许在单细胞水平上分析肿瘤的基因组和转录组,这为潜在地鉴定这些较大肿瘤中的稀有癌症干细胞提供了分辨率。在本章中,我们回顾了下一代 RNA 测序技术的发展,单细胞分离和测序的方法学,测序数据分析以及在卵巢癌中的潜在应用。我们还总结了目前使用卵巢癌单细胞测序的已发表工作。通过利用这项新技术来描述稀有亚群的基因表达,可能会在卵巢癌中发现新的靶点和治疗途径,从而改变治疗模式。

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Single-Cell RNA Sequencing of Ovarian Cancer: Promises and Challenges.卵巢癌的单细胞 RNA 测序:前景与挑战。
Adv Exp Med Biol. 2021;1330:113-123. doi: 10.1007/978-3-030-73359-9_7.
2
Single cell sequencing reveals heterogeneity within ovarian cancer epithelium and cancer associated stromal cells.单细胞测序揭示了卵巢癌上皮细胞和癌症相关基质细胞内的异质性。
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New markers for human ovarian cancer that link platinum resistance to the cancer stem cell phenotype and define new therapeutic combinations and diagnostic tools.与铂类耐药相关的人类卵巢癌新标志物与癌症干细胞表型相关,并确定新的治疗组合和诊断工具。
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Development of a relapse-related RiskScore model to predict the drug sensitivity and prognosis for patients with ovarian cancer.开发一种与复发相关的风险评分模型,以预测卵巢癌患者的药物敏感性和预后。
PeerJ. 2025 Aug 11;13:e19764. doi: 10.7717/peerj.19764. eCollection 2025.
2
Application of single cell sequencing technology in ovarian cancer research (review).单细胞测序技术在卵巢癌研究中的应用(综述)。
Funct Integr Genomics. 2024 Aug 28;24(5):144. doi: 10.1007/s10142-024-01432-w.
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Integrated multi-omics analyses and functional validation reveal TTK as a novel EMT activator for endometrial cancer.

本文引用的文献

1
A single-cell landscape of high-grade serous ovarian cancer.高级别浆液性卵巢癌的单细胞图谱。
Nat Med. 2020 Aug;26(8):1271-1279. doi: 10.1038/s41591-020-0926-0. Epub 2020 Jun 22.
2
Identification of grade and origin specific cell populations in serous epithelial ovarian cancer by single cell RNA-seq.通过单细胞 RNA 测序鉴定浆液性上皮性卵巢癌的分级和起源特异性细胞群。
PLoS One. 2018 Nov 1;13(11):e0206785. doi: 10.1371/journal.pone.0206785. eCollection 2018.
3
Comparison of clustering tools in R for medium-sized 10x Genomics single-cell RNA-sequencing data.
整合多组学分析和功能验证揭示 TTK 是子宫内膜癌中一种新型 EMT 激活物。
J Transl Med. 2023 Feb 25;21(1):151. doi: 10.1186/s12967-023-03998-8.
4
Spatial RNA sequencing methods show high resolution of single cell in cancer metastasis and the formation of tumor microenvironment.空间 RNA 测序方法显示了在癌症转移和肿瘤微环境形成中单细胞的高分辨率。
Biosci Rep. 2023 Feb 27;43(2). doi: 10.1042/BSR20221680.
用于中等规模10x基因组学单细胞RNA测序数据的R语言聚类工具比较
F1000Res. 2018 Aug 15;7:1297. doi: 10.12688/f1000research.15809.2. eCollection 2018.
4
Immune Cell Population in Ovarian Tumor Microenvironment.卵巢肿瘤微环境中的免疫细胞群体
J Cancer. 2017 Aug 25;8(15):2915-2923. doi: 10.7150/jca.20314. eCollection 2017.
5
Comprehensive single-cell transcriptional profiling of a multicellular organism.多细胞生物的全面单细胞转录谱分析。
Science. 2017 Aug 18;357(6352):661-667. doi: 10.1126/science.aam8940.
6
A comparative strategy for single-nucleus and single-cell transcriptomes confirms accuracy in predicted cell-type expression from nuclear RNA.一种单细胞和单核转录组的比较策略证实了核 RNA 预测细胞类型表达的准确性。
Sci Rep. 2017 Jul 20;7(1):6031. doi: 10.1038/s41598-017-04426-w.
7
Computational approaches for interpreting scRNA-seq data.用于解释单细胞RNA测序数据的计算方法。
FEBS Lett. 2017 Aug;591(15):2213-2225. doi: 10.1002/1873-3468.12684. Epub 2017 Jun 12.
8
Seq-Well: portable, low-cost RNA sequencing of single cells at high throughput.Seq-Well:高通量、便携式、低成本的单细胞 RNA 测序。
Nat Methods. 2017 Apr;14(4):395-398. doi: 10.1038/nmeth.4179. Epub 2017 Feb 13.
9
Sequencing thousands of single-cell genomes with combinatorial indexing.利用组合索引对数千个单细胞基因组进行测序。
Nat Methods. 2017 Mar;14(3):302-308. doi: 10.1038/nmeth.4154. Epub 2017 Jan 30.
10
Single cell sequencing reveals heterogeneity within ovarian cancer epithelium and cancer associated stromal cells.单细胞测序揭示了卵巢癌上皮细胞和癌症相关基质细胞内的异质性。
Gynecol Oncol. 2017 Mar;144(3):598-606. doi: 10.1016/j.ygyno.2017.01.015. Epub 2017 Jan 19.