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使用生物信息学鉴定雷公藤红素调控胃腺癌患者肿瘤微环境的潜在靶点。

Identification of potential targets of triptolide in regulating the tumor microenvironment of stomach adenocarcinoma patients using bioinformatics.

机构信息

School of Basic Medicine, Chengdu University of Traditional Chinese Medicine, Chengdu, China.

出版信息

Bioengineered. 2021 Dec;12(1):4304-4319. doi: 10.1080/21655979.2021.1945522.


DOI:10.1080/21655979.2021.1945522
PMID:34348580
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8806726/
Abstract

This study aimed to identify potential pharmacological targets of triptolide regulating the tumor microenvironment (TME) of stomach adenocarcinoma (STAD) patients. A total of 343 STAD cases from The Cancer Genome Atlas (TCGA) were assigned into high- or low-score groups applying Estimation of STromal and Immune cells in MAlignant Tumor tissues using Expression data (ESTIMATE). Hub genes were identified from differentially expressed genes (DEGs) shared by stromal- and immune-related components in the TME of STAD patients using R software. Cox regression analysis was used to identify genes significantly correlated with STAD patient survival. Triptolide target genes were predicted from the Traditional Chinese Medicine Systems Pharmacology Database and Analysis Platform (TCMSP). Top 30 genes filtered by Cytohubba from 734 DEGs were screened as hub genes. Forty-two genes were found to be at high risk for STAD prognosis. Thirty-four targets of triptolide were predicted using the TCMSP database. Importantly, C-X-C chemokine receptor type 4 (CXCR4) was identified as a potential target of triptolide associated with the TME in STAD. Analysis of survival highlighted the association between CXCR4 upregulation with STAD progression and poor prognosis. Gene Set Enrichment Analysis (GSEA) confirmed that genes in the CXCR4- upregulated group had significant enrichment in immune-linked pathways. Additionally, triptolide targets were found to be significantly enriched in CXCR4-related chemokine and cancer-related p53 signaling pathways. Molecular docking demonstrated a high affinity between triptolide and CXCR4. In conclusion, CXCR4 may be a therapeutic target of triptolide in the treatment of STAD patients by modulating the TME.

摘要

本研究旨在鉴定雷公藤红素调节胃腺癌(STAD)患者肿瘤微环境(TME)的潜在药理靶点。从癌症基因组图谱(TCGA)中总共选取了 343 例 STAD 病例,应用基于表达数据的肿瘤基质和免疫细胞评估算法(ESTIMATE)将其分为高评分组和低评分组。使用 R 软件从 STAD 患者 TME 中与基质和免疫相关成分共享的差异表达基因(DEGs)中确定枢纽基因。使用 Cox 回归分析鉴定与 STAD 患者生存显著相关的基因。从中药系统药理学数据库和分析平台(TCMSP)中预测雷公藤红素的靶基因。从 734 个 DEGs 中通过 Cytohubba 筛选出前 30 个基因作为枢纽基因。发现 42 个基因与 STAD 预后高风险相关。使用 TCMSP 数据库预测了 34 个雷公藤红素的靶基因。重要的是,C-X-C 趋化因子受体 4(CXCR4)被鉴定为与 STAD 中 TME 相关的雷公藤红素的潜在靶点。生存分析强调了 CXCR4 上调与 STAD 进展和不良预后之间的关联。基因集富集分析(GSEA)证实,CXCR4 上调组中的基因在免疫相关途径中具有显著富集。此外,还发现雷公藤红素靶基因在与 CXCR4 相关的趋化因子和癌症相关的 p53 信号通路中显著富集。分子对接表明雷公藤红素与 CXCR4 具有高亲和力。总之,通过调节 TME,CXCR4 可能成为雷公藤红素治疗 STAD 患者的治疗靶点。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/55ab/8806726/0fda65d5d840/KBIE_A_1945522_F0006_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/55ab/8806726/b61ed9e577f4/KBIE_A_1945522_UF0001_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/55ab/8806726/fafa3cc8a11f/KBIE_A_1945522_F0001_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/55ab/8806726/4e3f1b7c21cb/KBIE_A_1945522_F0002_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/55ab/8806726/e76eafd74f51/KBIE_A_1945522_F0003_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/55ab/8806726/5c6d2d1e57de/KBIE_A_1945522_F0004_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/55ab/8806726/6f9faf90c5e6/KBIE_A_1945522_F0005_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/55ab/8806726/0fda65d5d840/KBIE_A_1945522_F0006_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/55ab/8806726/b61ed9e577f4/KBIE_A_1945522_UF0001_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/55ab/8806726/fafa3cc8a11f/KBIE_A_1945522_F0001_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/55ab/8806726/4e3f1b7c21cb/KBIE_A_1945522_F0002_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/55ab/8806726/e76eafd74f51/KBIE_A_1945522_F0003_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/55ab/8806726/5c6d2d1e57de/KBIE_A_1945522_F0004_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/55ab/8806726/6f9faf90c5e6/KBIE_A_1945522_F0005_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/55ab/8806726/0fda65d5d840/KBIE_A_1945522_F0006_OC.jpg

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本文引用的文献

[1]
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[2]
Bioinformatics analysis reveals the competing endogenous RNA (ceRNA) coexpression network in the tumor microenvironment and prognostic biomarkers in soft tissue sarcomas.

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Long non-coding RNA DUXAP8 promotes the cell proliferation, migration, and invasion of papillary thyroid carcinoma via miR-223-3p mediated regulation of CXCR4.

Bioengineered. 2021-12

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Systemic dendrimer delivery of triptolide to tumor-associated macrophages improves anti-tumor efficacy and reduces systemic toxicity in glioblastoma.

J Control Release. 2021-1-10

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