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三种多重耐药菌的全基因组分析及其耐药相关性的基因组学洞察

Whole Genome Analysis of Three Multi-Drug Resistant and Genomic Insights Into Their Relatedness With Resistant .

作者信息

Li Menghan, Yan Shaofei, Fanning Séamus, Li Fengqin, Xu Jin

机构信息

NHC Key Laboratory of Food Safety Risk Assessment, China National Center for Food Safety Risk Assessment, Beijing, China.

UCD-Centre for Food Safety, School of Public Health, Physiotherapy and Sports Science, University College Dublin, Dublin, Ireland.

出版信息

Front Microbiol. 2021 Jul 23;12:694361. doi: 10.3389/fmicb.2021.694361. eCollection 2021.

Abstract

are Gram-positive rod-shaped bacteria, which are not generally infectious as opposed to . However, the comparatively high genomic similarity between both along with on occasion, their coexistence in similar ecological niches may present the opportunity for resistance or virulence gene transfer. In this study, three multi-drug resistant originally cultured from food were put forward for long-read genome sequencing. Chromosome and plasmid genomes were assembled and annotated. Analysis demonstrated that the resistant phenotypes correlated well with genotypes. Three plasmids pLI42, pLI203, and pLI47-1 were identified which harbor resistance islands. Sequence alignments suggested that plasmids pLI42 and pLI203 were highly similar to a previously sequenced plasmid pLR1. Similarly, another three types of resistance gene islands were observed on chromosome, including (M) gene islands (transposon Tn orthologs), gene islands and (A) gene islands. All three isolates possessed listeria pathogenicity island-4 (LIPI-4) which is linked to cases of mengitis. Further genome environment and phylogenic analysis of regions flanking LIPI-4 of and showed that these may have common origins and with the potential to transmit from the former. Our findings raise the possible need to include both and in food surveillance programs so as to further understand of the origins of antimicrobial resistance and virulence markers of public health importance in

摘要

是革兰氏阳性杆状细菌,与……不同,它们一般不具有传染性。然而,两者之间相对较高的基因组相似性,以及偶尔在相似生态位中共存的情况,可能为抗性或毒力基因转移提供机会。在本研究中,提出了三种最初从食品中培养的多重耐药……进行长读长基因组测序。对染色体和质粒基因组进行了组装和注释。分析表明,抗性表型与基因型密切相关。鉴定出三种携带抗性岛的质粒pLI42、pLI203和pLI47-1。序列比对表明,质粒pLI42和pLI203与先前测序的……质粒pLR1高度相似。同样,在染色体上观察到另外三种类型的抗性基因岛,包括(M)基因岛(转座子Tn直系同源物)、……基因岛和(A)基因岛。所有三个……分离株都拥有与脑膜炎病例相关的李斯特菌致病岛-4(LIPI-4)。对……和……的LIPI-4侧翼区域的进一步基因组环境和系统发育分析表明,这些区域可能有共同的起源,并且有可能从前者传播。我们的研究结果表明,可能需要将……和……都纳入食品监测计划,以便进一步了解具有公共卫生重要性的抗菌抗性和毒力标记的起源。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b856/8343405/3668b75feb46/fmicb-12-694361-g001.jpg

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