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基于疫情传播的储层计算:以新冠疫情病例为例

Reservoir computing on epidemic spreading: A case study on COVID-19 cases.

作者信息

Ghosh Subrata, Senapati Abhishek, Mishra Arindam, Chattopadhyay Joydev, Dana Syamal K, Hens Chittaranjan, Ghosh Dibakar

机构信息

Physics and Applied Mathematics Unit, Indian Statistical Institute, 203 B. T. Road, Kolkata 700108, India.

Agricultural and Ecological Research Unit, Indian Statistical Institute, 203 B. T. Road, Kolkata 700108, India.

出版信息

Phys Rev E. 2021 Jul;104(1-1):014308. doi: 10.1103/PhysRevE.104.014308.

DOI:10.1103/PhysRevE.104.014308
PMID:34412296
Abstract

A reservoir computing based echo state network (ESN) is used here for the purpose of predicting the spread of a disease. The current infection trends of a disease in some targeted locations are efficiently captured by the ESN when it is fed with the infection data for other locations. The performance of the ESN is first tested with synthetic data generated by numerical simulations of independent uncoupled patches, each governed by the classical susceptible-infected-recovery model for a choice of distributed infection parameters. From a large pool of synthetic data, the ESN predicts the current trend of infection in 5% patches by exploiting the uncorrelated infection trend of 95% patches. The prediction remains consistent for most of the patches for approximately 4 to 5 weeks. The machine's performance is further tested with real data on the current COVID-19 pandemic collected for different countries. We show that our proposed scheme is able to predict the trend of the disease for up to 3 weeks for some targeted locations. An important point is that no detailed information on the epidemiological rate parameters is needed; the success of the machine rather depends on the history of the disease progress represented by the time-evolving data sets of a large number of locations. Finally, we apply a modified version of our proposed scheme for the purpose of future forecasting.

摘要

本文使用基于储层计算的回声状态网络(ESN)来预测疾病的传播。当将其他地点的感染数据输入到ESN中时,它能够有效地捕捉某些目标地点疾病的当前感染趋势。ESN的性能首先通过对独立非耦合斑块进行数值模拟生成的合成数据进行测试,每个斑块均由经典的易感-感染-恢复模型控制,并选择了分布式感染参数。从大量合成数据中,ESN通过利用95%斑块的不相关感染趋势来预测5%斑块的当前感染趋势。在大约4到5周的时间里,大多数斑块的预测结果保持一致。该机器的性能进一步用不同国家收集的当前新冠疫情的真实数据进行测试。我们表明,我们提出的方案能够对某些目标地点的疾病趋势进行长达3周的预测。一个重要的点是,不需要关于流行病学率参数的详细信息;该机器的成功更多地取决于大量地点随时间演变的数据集所代表的疾病进展历史。最后,我们应用我们提出的方案的一个修改版本进行未来预测。

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