i3S - Instituto de Investigação e Inovação em Saúde, Porto, Portugal; IPATIMUP - Institute of Molecular Pathology and Immunology of the University of Porto, Porto, Portugal; International Doctoral Programme in Molecular and Cellular Biotechnology Applied to Health Sciences (BiotechHealth) from Institute of Biomedical Sciences Abel Salazar (ICBAS), University of Porto, Porto, Portugal.
Unité fonctionnelle d'Oncogénétique clinique, Département de Génétique, Groupe Hospitalier Pitié-Salpêtrière, AP-HP. Sorbonne Université, 75013, Paris, France; Chirurgie générale et digestive, Hôpital Saint-Antoine, AP-HP. Sorbonne Université, 75012, Paris, France.
Eur J Med Genet. 2021 Oct;64(10):104316. doi: 10.1016/j.ejmg.2021.104316. Epub 2021 Aug 21.
Hereditary Diffuse Gastric Cancer (HDGC) is a cancer predisposing syndrome mainly caused by germline inactivating variants in CDH1, encoding E-cadherin. Early-onset diffuse gastric cancer (DGC) and/or invasive lobular breast cancer (LBC) are the main phenotypes in CDH1-associated HDGC. CTNNA1, encoding for α-E-catenin, and E-cadherin-partner in the adherens junction complex, has been recently classified as a HDGC predisposing gene. Nevertheless, little is known about CTNNA1 tumor spectrum in variant carriers and variant-type associated causality. Herein, we systematically reviewed the literature searching for CTNNA1 germline variants carriers, further categorized them according to HDGC clinical criteria (HDGC vs non-HDGC), collected phenotypes, classified variants molecularly and according to CDH1 ACMG/AMP guidelines and performed genotype-phenotype analysis. We found 41 families carrying CTNNA1 germline variants encompassing in total 105 probands and relatives. All probands from 13 HDGC families presented DGC and their average age of onset was 40 ± 17 years; 10/13 (77%) HDGC families carried a pathogenic (P) variant. Most probands from 28 non-HDGC families developed unspecified-BC, as well as most of their relatives; 4/28 (14%) carried a P variant, 16/28 (57%) carried a likely pathogenic (LP) variant, 7/28 (25%) carried variants of unknown significance (VUS) and 1/28 (4%) carried a likely benign variant. Regardless of clinical criteria, 97% (32/33) of probands and relatives from P variant-carrier families had DGC/unspecified-GC. In LP variant-carrier families, 82% (28/34) of probands and relatives had unspecified-BC. Only 2/105 individuals had LBC. A cluster of frameshift and nonsense variants was found in CTNNA1 last exon of non-HDGC families and classified as VUS. In conclusion, current available data confirms an association of CTNNA1 P variants with early-onset DGC, but not with LBC. We demonstrate that in ascertained cohorts, CTNNA1 P variants explain <2% of HDGC families and support the use of ACMG/AMP CDH1 specific variant curation guidelines, while no specific guidelines are developed for CTNNA1 variant classification. Moreover, we demonstrated that truncating variants at the CTNNA1 NMD-incompetent last exon have limited deleteriousness, and that CTNNA1 LP variants have lower actionability than CDH1 LP variants. Current knowledge supports considering only CTNNA1 P variants as clinically actionable in HDGC carrying families.
遗传性弥漫性胃癌(HDGC)是一种主要由 CDH1 胚系失活变异引起的癌易感性综合征,该基因编码 E-钙黏蛋白。早发性弥漫性胃癌(DGC)和/或浸润性小叶乳腺癌(LBC)是 CDH1 相关 HDGC 的主要表型。CTNNA1 编码 α-E-钙黏蛋白,是黏着连接复合物中的 E-钙黏蛋白伙伴,最近被归类为 HDGC 易感性基因。然而,对于 CTNNA1 变异携带者的肿瘤谱和变异型相关因果关系知之甚少。在此,我们系统地检索了文献中 CTNNA1 种系变异携带者,并根据 HDGC 临床标准(HDGC 与非 HDGC)进一步对其进行分类,收集表型,对变异进行分子分类,并根据 CDH1 ACMG/AMP 指南进行分类,并进行基因型-表型分析。我们发现 41 个携带 CTNNA1 种系变异的家族,共有 105 名先证者和亲属。13 个 HDGC 家族的所有先证者均患有 DGC,其平均发病年龄为 40±17 岁;13 个 HDGC 家族中有 10/13(77%)携带致病性(P)变异。28 个非 HDGC 家族的大多数先证者患有未特指的-BC,其大多数亲属也是如此;4/28(14%)携带 P 变异,16/28(57%)携带可能致病(LP)变异,7/28(25%)携带意义不明的变异(VUS),1/28(4%)携带可能良性的变异。无论临床标准如何,携带 P 变异的 33 个先证者和亲属中有 97%(32/33)患有 DGC/未特指的-GC。在 LP 变异携带者的家族中,82%(28/34)的先证者和亲属患有未特指的-BC。仅有 2/105 人患有 LBC。在非 HDGC 家族的 CTNNA1 最后外显子中发现了一组移码和无义变异,被归类为 VUS。总之,目前的可用数据证实 CTNNA1 P 变异与早发性 DGC 相关,但与 LBC 无关。我们证明,在确定的队列中,CTNNA1 P 变异仅解释了<2%的 HDGC 家族,并支持使用 ACMG/AMP CDH1 特异性变异分类指南,而 CTNNA1 变异分类尚未制定特定指南。此外,我们证明 CTNNA1 无义突变最后外显子上的截断变异具有有限的致病变异,而 CTNNA1 LP 变异的可操作性低于 CDH1 LP 变异。目前的知识支持仅将 CTNNA1 P 变异视为携带 CTNNA1 变异的 HDGC 家族中的临床可操作性变异。
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