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基于遗传谱和已确立风险因素预测帕金森病风险。

Prediction of Parkinson's Disease Risk Based on Genetic Profile and Established Risk Factors.

机构信息

Neurology Clinics, The Cyprus Institute of Neurology and Genetics, Nicosia 2371, Cyprus.

The Cyprus School of Molecular Medicine, The Cyprus Institute of Neurology and Genetics, Nicosia 2371, Cyprus.

出版信息

Genes (Basel). 2021 Aug 20;12(8):1278. doi: 10.3390/genes12081278.

DOI:10.3390/genes12081278
PMID:34440451
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8393959/
Abstract

BACKGROUND

Parkinson's disease (PD) is a neurodegenerative disorder, and literature suggests that genetics and lifestyle/environmental factors may play a key role in the triggering of the disease. This study aimed to evaluate the predictive performance of a 12-Single Nucleotide Polymorphisms (SNPs) polygenic risk score (PRS) in combination with already established PD-environmental/lifestyle factors.

METHODS

Genotypic and lifestyle/environmental data on 235 PD-patients and 464 controls were obtained from a previous study carried out in the Cypriot population. A PRS was calculated for each individual. Univariate logistic-regression analysis was used to assess the association of PRS and each risk factor with PD-status. Stepwise-regression analysis was used to select the best predictive model for PD combining genetic and lifestyle/environmental factors.

RESULTS

The 12-SNPs PRS was significantly increased in PD-cases compared to controls. Furthermore, univariate analyses showed that age, head injury, family history, depression, and Body Mass Index (BMI) were significantly associated with PD-status. Stepwise-regression suggested that a model which includes PRS and seven other independent lifestyle/environmental factors is the most predictive of PD in our population.

CONCLUSIONS

These results suggest an association between both genetic and environmental factors and PD, and highlight the potential for the use of PRS in combination with the classical risk factors for risk prediction of PD.

摘要

背景

帕金森病(PD)是一种神经退行性疾病,文献表明遗传和生活方式/环境因素可能在触发疾病方面发挥关键作用。本研究旨在评估 12 个单核苷酸多态性(SNP)多基因风险评分(PRS)与已确定的 PD 环境/生活方式因素相结合的预测性能。

方法

从之前在塞浦路斯人群中进行的一项研究中获得了 235 名 PD 患者和 464 名对照者的基因型和生活方式/环境数据。为每个个体计算 PRS。使用单变量逻辑回归分析评估 PRS 和每个风险因素与 PD 状态的关联。逐步回归分析用于选择结合遗传和生活方式/环境因素的最佳 PD 预测模型。

结果

12-SNP PRS 在 PD 病例中明显高于对照组。此外,单变量分析表明,年龄、头部损伤、家族史、抑郁和体重指数(BMI)与 PD 状态显著相关。逐步回归表明,包含 PRS 和其他七个独立生活方式/环境因素的模型是我们人群中 PD 最具预测性的模型。

结论

这些结果表明遗传和环境因素与 PD 之间存在关联,并强调了 PRS 与经典风险因素结合用于 PD 风险预测的潜力。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b0e2/8393959/6f34e56d9d5f/genes-12-01278-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b0e2/8393959/a6701188b219/genes-12-01278-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b0e2/8393959/e16dbce4593c/genes-12-01278-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b0e2/8393959/6f34e56d9d5f/genes-12-01278-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b0e2/8393959/a6701188b219/genes-12-01278-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b0e2/8393959/e16dbce4593c/genes-12-01278-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b0e2/8393959/6f34e56d9d5f/genes-12-01278-g003.jpg

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2
The Parkinson's Disease Genome-Wide Association Study Locus Browser.帕金森病全基因组关联研究基因座浏览器。
Mov Disord. 2020 Nov;35(11):2056-2067. doi: 10.1002/mds.28197. Epub 2020 Aug 31.
3
Clinical Features and Risk Factors of Parkinson's Disease in a Population of Khyber Pakhtunkhwa, Pakistan: A Case-Control Study.
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J Clin Endocrinol Metab. 2024 Dec 18;110(1):e61-e67. doi: 10.1210/clinem/dgae166.
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Prediction of Parkinson's Disease Using Machine Learning Methods.使用机器学习方法预测帕金森病。
Biomolecules. 2023 Dec 8;13(12):1761. doi: 10.3390/biom13121761.
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A genome-wide association study coupled with machine learning approaches to identify influential demographic and genomic factors underlying Parkinson's disease.一项全基因组关联研究结合机器学习方法,以确定帕金森病潜在的有影响力的人口统计学和基因组因素。
Front Genet. 2023 Sep 29;14:1230579. doi: 10.3389/fgene.2023.1230579. eCollection 2023.
巴基斯坦开伯尔-普赫图赫瓦省帕金森病的临床特征和危险因素:一项病例对照研究。
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Penetrance of Parkinson's Disease in LRRK2 p.G2019S Carriers Is Modified by a Polygenic Risk Score.LRRK2 p.G2019S 携带者帕金森病的外显率受多基因风险评分的影响。
Mov Disord. 2020 May;35(5):774-780. doi: 10.1002/mds.27974. Epub 2020 Jan 20.
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Front Neurol. 2019 Oct 17;10:1047. doi: 10.3389/fneur.2019.01047. eCollection 2019.
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The interplay of aging, genetics and environmental factors in the pathogenesis of Parkinson's disease.衰老、遗传因素与环境因素在帕金森病发病机制中的相互作用。
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Polygenic Risk Scores for Prediction of Breast Cancer and Breast Cancer Subtypes.多基因风险评分在乳腺癌及乳腺癌亚型预测中的应用。
Am J Hum Genet. 2019 Jan 3;104(1):21-34. doi: 10.1016/j.ajhg.2018.11.002. Epub 2018 Dec 13.
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