Institute of Molecular Biology and Biotechnology, FORTH, 70013 Herakleion, Crete, Greece.
Department of Biology, University of Crete, 70013 Herakleion, Crete, Greece.
Cells. 2021 Aug 8;10(8):2026. doi: 10.3390/cells10082026.
During liver organogenesis, cellular transcriptional profiles are constantly reshaped by the action of hepatic transcriptional regulators, including FoxA1-3, GATA4/6, HNF1α/β, HNF4α, HNF6, OC-2, C/EBPα/β, Hex, and Prox1. These factors are crucial for the activation of hepatic genes that, in the context of compact chromatin, cannot access their targets. The initial opening of highly condensed chromatin is executed by a special class of transcription factors known as pioneer factors. They bind and destabilize highly condensed chromatin and facilitate access to other "non-pioneer" factors. The association of target genes with pioneer and non-pioneer transcription factors takes place long before gene activation. In this way, the underlying gene regulatory regions are marked for future activation. The process is called "bookmarking", which confers transcriptional competence on target genes. Developmental bookmarking is accompanied by a dynamic maturation process, which prepares the genomic loci for stable and efficient transcription. Stable hepatic expression profiles are maintained during development and adulthood by the constant availability of the main regulators. This is achieved by a self-sustaining regulatory network that is established by complex cross-regulatory interactions between the major regulators. This network gradually grows during liver development and provides an epigenetic memory mechanism for safeguarding the optimal expression of the regulators.
在肝器官发生过程中,细胞转录谱不断被肝转录调控因子重塑,包括 FoxA1-3、GATA4/6、HNF1α/β、HNF4α、HNF6、OC-2、C/EBPα/β、Hex 和 Prox1。这些因素对于激活肝基因至关重要,在致密染色质的情况下,肝基因无法接触到它们的靶标。高度浓缩染色质的初始打开是由一类特殊的转录因子(称为先驱因子)执行的。它们结合并使高度浓缩的染色质不稳定,并促进其他“非先驱”因子的进入。靶基因与先驱和非先驱转录因子的结合发生在基因激活之前很久。通过这种方式,潜在的基因调控区域被标记为未来的激活。这个过程被称为“书签”,赋予靶基因转录能力。发育书签伴随着一个动态成熟过程,为稳定和有效的转录准备基因组位点。主要调控因子的持续可用性确保了靶基因在发育和成年期的稳定肝表达谱。这是通过一个由主要调控因子之间复杂的交叉调控相互作用建立的自我维持的调控网络来实现的。该网络在肝发育过程中逐渐增长,为保护调控因子的最佳表达提供了一种表观遗传记忆机制。