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通过RNA测序分析对粟酒裂殖酵母中与葡萄糖可用性相关的基因进行转录组测序和筛选。

Transcriptome sequencing and screening of genes related to glucose availability in Schizosaccharomyces pombe by RNA-seq analysis.

作者信息

Tarhan Çağatay, Çakır Özgür

机构信息

Istanbul University, Faculty of Science, Department of Molecular Biology and Genetics, Istanbul, Turkey.

出版信息

Genet Mol Biol. 2021 Aug 27;44(3):e20200245. doi: 10.1590/1678-4685-GMB-2020-0245. eCollection 2021.

Abstract

While calorie restriction is the most used experimental intervention to increase lifespan in numerous model organisms, increasing evidence suggests that excess glucose leads to decreased lifespan in various organisms. To fully understand the molecular basis of the pro-aging effect of glucose, it is still important to discover genetic interactions, gene expression patterns, and molecular responses depending on glucose availability. Here, we compared the gene expression profiles in Schizosaccharomyces pombe mid-log-phase cells grown in three different Synthetic Dextrose media with 3%, 5%, and 8% glucose, using the RNA sequencing method. Expression patterns of genes that function in carbohydrate metabolism were downregulated as expected, and these genes were downregulated in line with the increase in glucose content. Significant and consistent changes in the expression were observed such as genes that encoding retrotransposable elements, heat shock proteins, glutathione S-transferase, cell agglutination protein, and conserved fungal proteins. We group some genes that function together in the transcription process and mitotic regulation, which have recently been associated with glucose availability. Our results shed light on the relationship between excess glucose, diverse cellular processes, and aging.

摘要

虽然热量限制是在众多模式生物中延长寿命最常用的实验干预手段,但越来越多的证据表明,过量葡萄糖会导致各种生物的寿命缩短。为了全面了解葡萄糖促衰老作用的分子基础,发现依赖葡萄糖可用性的遗传相互作用、基因表达模式和分子反应仍然很重要。在这里,我们使用RNA测序方法,比较了在含有3%、5%和8%葡萄糖的三种不同合成葡萄糖培养基中生长的粟酒裂殖酵母对数中期细胞的基因表达谱。碳水化合物代谢相关基因的表达模式如预期下调,且这些基因的下调与葡萄糖含量的增加一致。观察到表达有显著且一致的变化,如编码反转录转座元件、热休克蛋白、谷胱甘肽S-转移酶、细胞凝集蛋白和保守真菌蛋白的基因。我们将一些在转录过程和有丝分裂调控中共同发挥作用的基因归为一组,这些基因最近与葡萄糖可用性有关。我们的研究结果揭示了过量葡萄糖、多种细胞过程与衰老之间的关系。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1ba5/8404550/c477e64d70a5/1415-4757-GMB-44-3-e20200245-gf1.jpg

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