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The blind men and the filament: Understanding structures and functions of microbial nanowires.盲人与灯丝:理解微生物纳米线的结构和功能。
Curr Opin Chem Biol. 2020 Dec;59:193-201. doi: 10.1016/j.cbpa.2020.08.004. Epub 2020 Oct 15.
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Electric field stimulates production of highly conductive microbial OmcZ nanowires.电场刺激高度导电的微生物 OmcZ 纳米线的产生。
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Molecular evidence for the adaptive evolution of Geobacter sulfurreducens to perform dissimilatory iron reduction in natural environments.分子证据表明 Geobacter sulfurreducens 适应自然环境进行异化铁还原的进化。
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Cryo-EM reveals the structural basis of long-range electron transport in a cytochrome-based bacterial nanowire.低温电子显微镜揭示了基于细胞色素的细菌纳米线中长程电子输运的结构基础。
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A Bayesian approach to beam-induced motion correction in cryo-EM single-particle analysis.一种用于冷冻电镜单颗粒分析中束流诱导运动校正的贝叶斯方法。
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地杆菌菌毛的结构揭示了其分泌行为而非纳米线行为。

Structure of Geobacter pili reveals secretory rather than nanowire behaviour.

作者信息

Gu Yangqi, Srikanth Vishok, Salazar-Morales Aldo I, Jain Ruchi, O'Brien J Patrick, Yi Sophia M, Soni Rajesh Kumar, Samatey Fadel A, Yalcin Sibel Ebru, Malvankar Nikhil S

机构信息

Microbial Sciences Institute Yale University, West Haven, CT, USA.

Department of Molecular, Cellular and Developmental Biology, Yale University, New Haven, CT, USA.

出版信息

Nature. 2021 Sep;597(7876):430-434. doi: 10.1038/s41586-021-03857-w. Epub 2021 Sep 1.

DOI:10.1038/s41586-021-03857-w
PMID:34471289
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9127704/
Abstract

Extracellular electron transfer by Geobacter species through surface appendages known as microbial nanowires is important in a range of globally important environmental phenomena, as well as for applications in bio-remediation, bioenergy, biofuels and bioelectronics. Since 2005, these nanowires have been thought to be type 4 pili composed solely of the PilA-N protein. However, previous structural analyses have demonstrated that, during extracellular electron transfer, cells do not produce pili but rather nanowires made up of the cytochromes OmcS and OmcZ. Here we show that Geobacter sulfurreducens binds PilA-N to PilA-C to assemble heterodimeric pili, which remain periplasmic under nanowire-producing conditions that require extracellular electron transfer. Cryo-electron microscopy revealed that C-terminal residues of PilA-N stabilize its copolymerization with PilA-C (to form PilA-N-C) through electrostatic and hydrophobic interactions that position PilA-C along the outer surface of the filament. PilA-N-C filaments lack π-stacking of aromatic side chains and show a conductivity that is 20,000-fold lower than that of OmcZ nanowires. In contrast with surface-displayed type 4 pili, PilA-N-C filaments show structure, function and localization akin to those of type 2 secretion pseudopili. The secretion of OmcS and OmcZ nanowires is lost when pilA-N is deleted and restored when PilA-N-C filaments are reconstituted. The substitution of pilA-N with the type 4 pili of other microorganisms also causes a loss of secretion of OmcZ nanowires. As all major phyla of prokaryotes use systems similar to type 4 pili, this nanowire translocation machinery may have a widespread effect in identifying the evolution and prevalence of diverse electron-transferring microorganisms and in determining nanowire assembly architecture for designing synthetic protein nanowires.

摘要

地杆菌属物种通过被称为微生物纳米线的表面附属物进行细胞外电子转移,这在一系列全球重要的环境现象中以及生物修复、生物能源、生物燃料和生物电子学的应用中都很重要。自2005年以来,这些纳米线一直被认为是仅由PilA-N蛋白组成的4型菌毛。然而,先前的结构分析表明,在细胞外电子转移过程中,细胞不会产生菌毛,而是产生由细胞色素OmcS和OmcZ组成的纳米线。我们在此表明,还原地杆菌将PilA-N与PilA-C结合以组装异二聚体菌毛,在需要细胞外电子转移的纳米线产生条件下,这些菌毛保留在周质中。冷冻电子显微镜显示,PilA-N的C端残基通过静电和疏水相互作用稳定其与PilA-C的共聚(形成PilA-N-C),这些相互作用使PilA-C沿着细丝的外表面定位。PilA-N-C细丝缺乏芳香族侧链的π堆积,其导电性比OmcZ纳米线低20000倍。与表面展示的4型菌毛相比,PilA-N-C细丝的结构、功能和定位类似于2型分泌假菌毛。当pilA-N缺失时,OmcS和OmcZ纳米线的分泌丧失,而当重建PilA-N-C细丝时分泌恢复。用其他微生物的4型菌毛替代pilA-N也会导致OmcZ纳米线分泌丧失。由于原核生物的所有主要门类都使用类似于4型菌毛的系统,这种纳米线转运机制可能在确定各种电子转移微生物的进化和流行情况以及确定用于设计合成蛋白质纳米线的纳米线组装结构方面具有广泛影响。

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