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探讨胆囊癌和黄色肉芽肿性胆囊炎患者血清中外泌体 mRNA、lncRNA 和 circRNA 的差异表达。

Exploration of differentially-expressed exosomal mRNAs, lncRNAs and circRNAs from serum samples of gallbladder cancer and xantho-granulomatous cholecystitis patients.

机构信息

Department of General Surgery, Shanghai Institute of Digestive Surgery, Ruijin Hospital, Shanghai Jiao Tong University, School of Medicine, Shanghai, China.

出版信息

Bioengineered. 2021 Dec;12(1):6134-6143. doi: 10.1080/21655979.2021.1972780.

DOI:10.1080/21655979.2021.1972780
PMID:34486489
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8806659/
Abstract

Gallbladder cancer (GBC) is the most common biliary tract malignancy worldwide. Although a growing number of studies have explored the mechanism of GBC, thus far, few molecules have been discovered that can be utilized as specific biomarkers for the early diagnosis and therapeutic treatment of GBC. Recent studies have shown that exosomes not only participate in the progression of tumors, but also carry specific information that can define multiple cancer types. The present study investigated the expression profiles of coding (or messenger) ribonucleic acids (mRNAs) and non-coding RNAs (ncRNAs, including long non-coding RNAs [lncRNAs] and circular RNAs [circRNAs]) in plasma-derived exosomes from GBC patients. Using high-throughput RNA sequencing and subsequent bioinformatic analysis, a number of differentially expressed (DE) mRNAs, lncRNAs, and circRNAs were identified in GBC exosomes, compared to their expressions in xantho-granulomatous cholecystitis (XGC) exosomes. Gene Ontology (GO) and Kyoto Encyclopedia of Gene and Genome (KEGG) analyses were then conducted to investigate the potential functions of these DE RNAs. Furthermore, the interaction networks and competing endogenous RNA networks of these DE RNAs and their target genes were investigated, revealing a complex regulatory network among mRNAs and ncRNAs. In summary, this study demonstrates the diagnostic value of plasma-derived exosomes in GBC and provides a new perspective on the mechanism of GBC.

摘要

胆囊癌(GBC)是全球最常见的胆道恶性肿瘤。尽管越来越多的研究探索了 GBC 的发病机制,但迄今为止,很少有分子被发现可作为 GBC 早期诊断和治疗的特异性生物标志物。最近的研究表明,外泌体不仅参与肿瘤的进展,还携带可定义多种癌症类型的特定信息。本研究检测了来自 GBC 患者血浆衍生的外泌体中编码(或信使)核糖核酸(mRNA)和非编码 RNA(ncRNA,包括长非编码 RNA [lncRNA] 和环状 RNA [circRNA])的表达谱。通过高通量 RNA 测序和随后的生物信息学分析,与 XGC 外泌体相比,GBC 外泌体中存在许多差异表达(DE)的 mRNA、lncRNA 和 circRNA。然后进行基因本体论(GO)和京都基因与基因组百科全书(KEGG)分析,以研究这些 DE RNA 的潜在功能。此外,还研究了这些 DE RNA 及其靶基因的相互作用网络和竞争内源性 RNA 网络,揭示了 mRNA 和 ncRNA 之间复杂的调控网络。总之,本研究证明了血浆衍生的外泌体在 GBC 中的诊断价值,并为 GBC 的发病机制提供了新的视角。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f02e/8806659/9b56d9de8e81/KBIE_A_1972780_F0006_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f02e/8806659/faea7981f66e/KBIE_A_1972780_F0001_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f02e/8806659/bca3ce5dd61a/KBIE_A_1972780_F0002_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f02e/8806659/9affa342e96d/KBIE_A_1972780_F0003_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f02e/8806659/2b8ba5a850e1/KBIE_A_1972780_F0004_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f02e/8806659/0c05812ad6fa/KBIE_A_1972780_F0005_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f02e/8806659/9b56d9de8e81/KBIE_A_1972780_F0006_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f02e/8806659/faea7981f66e/KBIE_A_1972780_F0001_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f02e/8806659/bca3ce5dd61a/KBIE_A_1972780_F0002_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f02e/8806659/9affa342e96d/KBIE_A_1972780_F0003_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f02e/8806659/2b8ba5a850e1/KBIE_A_1972780_F0004_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f02e/8806659/0c05812ad6fa/KBIE_A_1972780_F0005_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f02e/8806659/9b56d9de8e81/KBIE_A_1972780_F0006_OC.jpg

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